Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1053
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   6e-09
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        27   7.7  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 26/39 (66%), Positives = 33/39 (84%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++V
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINV 39



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGS-GVG------------XXXXXXXXXXXXXXXXXXS 324
           P+WPGLFAKAL+G N+ DLI + G+ G G                              S
Sbjct: 41  PFWPGLFAKALQGHNIADLILSAGAPGAGGAVAAAPAAGGEAKAEEKKEEAKKEESEEES 100

Query: 325 DDDMGFGLFD 354
           DDDMGFGLFD
Sbjct: 101 DDDMGFGLFD 110


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 322 SDDDMGFGLFD 354
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 243 DQVTDIDAFQGFGEQTWPIWLVHLQPPLSR 154
           DQ+  I+ F+  G++ WP +   L   L +
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQ 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,533,409
Number of Sequences: 59808
Number of extensions: 203947
Number of successful extensions: 420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)