Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1053
         (467 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    52   8e-07
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    52   8e-07
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    52   8e-07
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    52   8e-07
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    52   8e-07
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                52   1e-06
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                48   2e-05

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 52.4 bits (120), Expect = 8e-07
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+V
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNV 39



 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSG-----------------VGXXXXXXXXXXXXXXX 312
           P+WPGLFAKAL  +N+  LI N+G+G                                  
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 313 XXXSDDDMGFGLFD 354
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 52.4 bits (120), Expect = 8e-07
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+V
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNV 39



 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSG-----------------VGXXXXXXXXXXXXXXX 312
           P+WPGLFAKAL  +N+  LI N+G+G                                  
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 313 XXXSDDDMGFGLFD 354
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 52.4 bits (120), Expect = 8e-07
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+V
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNV 39



 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSG-----------------VGXXXXXXXXXXXXXXX 312
           P+WPGLFAKAL  +N+  LI N+G+G                                  
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 313 XXXSDDDMGFGLFD 354
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 52.4 bits (120), Expect = 8e-07
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+V
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNV 39



 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSG 261
           P+WPGLFAKAL  +N+  LI N+G+G
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAG 66


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 52.4 bits (120), Expect = 8e-07
 Identities = 24/39 (61%), Positives = 32/39 (82%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M S +ELAC+YSALIL DD+V VT +KI+ ++KAA V+V
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNV 39



 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSG-----------------VGXXXXXXXXXXXXXXX 312
           P+WPGLFAKAL  +N+  LI N+G+G                                  
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 313 XXXSDDDMGFGLFD 354
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 23/39 (58%), Positives = 32/39 (82%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M S +ELAC+YSAL+L DD+V VT +KI+ ++KAA V+V
Sbjct: 1   MASVSELACIYSALVLHDDEVTVTEDKINALIKAAGVNV 39



 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSG-----------------VGXXXXXXXXXXXXXXX 312
           P+WPGLFAKAL  +N+  LI N+G+G                                  
Sbjct: 41  PFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 313 XXXSDDDMGFGLFD 354
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 23/39 (58%), Positives = 31/39 (79%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M S +ELA +YSALIL DD+V VT +KI+ ++KAA V+V
Sbjct: 1   MASVSELARIYSALILHDDEVTVTEDKINALIKAAGVNV 39



 Score = 41.9 bits (94), Expect = 0.001
 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSG-----------------VGXXXXXXXXXXXXXXX 312
           P+WPGLFAKAL  +N+  LI ++G+G                                  
Sbjct: 41  PFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEE 100

Query: 313 XXXSDDDMGFGLFD 354
              SDDDMGFGLFD
Sbjct: 101 SEESDDDMGFGLFD 114


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,509,970
Number of Sequences: 237096
Number of extensions: 1054390
Number of successful extensions: 1487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)