Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1053
         (467 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    66   2e-11
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    66   2e-11
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    66   2e-11
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    62   3e-10
AY051574-1|AAK92998.1|  339|Drosophila melanogaster GH22160p pro...    31   0.78 
AE014297-3625|AAF56335.1|  339|Drosophila melanogaster CG5805-PA...    31   0.78 

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 32/39 (82%), Positives = 37/39 (94%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+V
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEV 39



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 38/72 (52%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSGVG---------------XXXXXXXXXXXXXXXXX 318
           PYWPGLFAKALEGINV+DLITNIGSGVG                                
Sbjct: 41  PYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESD 100

Query: 319 XSDDDMGFGLFD 354
            SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 32/39 (82%), Positives = 37/39 (94%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+V
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEV 39



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 38/72 (52%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSGVG---------------XXXXXXXXXXXXXXXXX 318
           PYWPGLFAKALEGINV+DLITNIGSGVG                                
Sbjct: 41  PYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESD 100

Query: 319 XSDDDMGFGLFD 354
            SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 32/39 (82%), Positives = 37/39 (94%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M +KAELACVY++LILVDDDVAVTGEKI+TILKAA V+V
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEV 39



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 38/72 (52%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSGVG---------------XXXXXXXXXXXXXXXXX 318
           PYWPGLFAKALEGINV+DLITNIGSGVG                                
Sbjct: 41  PYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESD 100

Query: 319 XSDDDMGFGLFD 354
            SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 37/72 (51%), Positives = 38/72 (52%), Gaps = 15/72 (20%)
 Frame = +1

Query: 184 PYWPGLFAKALEGINVRDLITNIGSGVG---------------XXXXXXXXXXXXXXXXX 318
           PYWPGLFAKALE INV+DLITNIGSGVG                                
Sbjct: 41  PYWPGLFAKALEAINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESD 100

Query: 319 XSDDDMGFGLFD 354
            SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 31/39 (79%), Positives = 36/39 (92%)
 Frame = +3

Query: 63  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDV 179
           M +KAELA VY++LILVDDDVAVTGEKI+TILKAA V+V
Sbjct: 1   MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEV 39


>AY051574-1|AAK92998.1|  339|Drosophila melanogaster GH22160p
           protein.
          Length = 339

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 276 RSSTHSRADVGDQVTDIDAFQGFGEQTWPIWLVHLQPPLSRWWKFSH 136
           RS  H   D+G ++   D F+GF  + +   L+   P  + WW F H
Sbjct: 185 RSRLHISMDIGREIMRRDGFRGF-YRGYTASLMAYVPNSAMWWAFYH 230


>AE014297-3625|AAF56335.1|  339|Drosophila melanogaster CG5805-PA
           protein.
          Length = 339

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 276 RSSTHSRADVGDQVTDIDAFQGFGEQTWPIWLVHLQPPLSRWWKFSH 136
           RS  H   D+G ++   D F+GF  + +   L+   P  + WW F H
Sbjct: 185 RSRLHISMDIGREIMRRDGFRGF-YRGYTASLMAYVPNSAMWWAFYH 230


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,140,343
Number of Sequences: 53049
Number of extensions: 337795
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)