Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1053
(467 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 58 2e-09
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 58 2e-09
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 29 2.2
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 29 2.2
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 29 2.2
Z77660-5|CAB01173.1| 284|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 27 5.1
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = +3
Query: 63 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVD 176
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVE 38
Score = 51.2 bits (117), Expect = 4e-07
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Frame = +1
Query: 184 PYWPGLFAKALEGINVRDLITNIGSGVG--------------XXXXXXXXXXXXXXXXXX 321
P WPGLFAKALEG++V++LIT++ SG G
Sbjct: 41 PNWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEE 100
Query: 322 SDDDMGFGLFD 354
SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = +3
Query: 63 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVD 176
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVE 38
Score = 54.8 bits (126), Expect = 3e-08
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Frame = +1
Query: 184 PYWPGLFAKALEGINVRDLITNIGSGVG--------------XXXXXXXXXXXXXXXXXX 321
PYWPGLFAKALEG++V++LIT++ SG G
Sbjct: 41 PYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEE 100
Query: 322 SDDDMGFGLFD 354
SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 322 SDDDMGFGLFD 354
SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 322 SDDDMGFGLFD 354
SDDDMGFGLFD
Sbjct: 97 SDDDMGFGLFD 107
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 322 SDDDMGFGLFD 354
SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110
>Z77660-5|CAB01173.1| 284|Caenorhabditis elegans Hypothetical
protein F38H4.5 protein.
Length = 284
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 197 PGQYG*YIYSRRFQDGGNFLTSYGNIIIHQ 108
P +YG +++ +RF D + TS+ + IIH+
Sbjct: 99 PERYGEHVFYKRFFDKLGYQTSFNHKIIHE 128
>Z75955-6|CAB00120.1| 451|Caenorhabditis elegans Hypothetical
protein R07B7.11 protein.
Length = 451
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +3
Query: 66 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAV-----DVLAILARSVRQS 212
+S+ + C++SA +++ +D+ + G+ +LK D L I+ R ++ S
Sbjct: 265 ISQFTVWCIWSAPLIMSNDLRIIGDSFKDVLKNKEAIKINQDPLGIMGRLIKNS 318
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 166 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 56
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 166 AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 56
A M EIFSPV++T+ R + S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,604,840
Number of Sequences: 27780
Number of extensions: 158051
Number of successful extensions: 342
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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