Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1052
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.6  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   5.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.0  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   8.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   8.7  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
 Frame = +2

Query: 206 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGEISRDGSVQ 373
           EY++EG  +++ N  IID +    E   G  KL      KA + T+T    E   D   Q
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSE-PLDTPEQ 658

Query: 374 V---LATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEI 541
           V   L     N ++A     +   +SH VF+  L+ +    G+   +  N I    S+ +
Sbjct: 659 VTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERL 718

Query: 542 DSSKLV 559
            SS+ V
Sbjct: 719 SSSQSV 724


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 291 SSPTTPIKPQS*QSLLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSL 443
           SS   P  P      ++      ++   S+RL + T+P+L   N   RKSL
Sbjct: 147 SSTMIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 402 PSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSIISSRNTPKR*TL 548
           P+LTT+NT  + S    SS   +E+ S+  +    + I++ +TP   T+
Sbjct: 296 PNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTI 344


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 530 SKEIDSSKLVHTDFSXEACKFTSSSVITEHGKH 628
           +KEI+SSK   TD   E   FT  +  + +  H
Sbjct: 96  AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 479  KLEGDAKTAVDNFIKEHSKEIDSSK 553
            K+EGDAKT  DN +++  K  D  K
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK 1330


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 449 LDETFSCHRICSCKRWRSYYSQSP 378
           L E    H+ C+ K W   YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 116 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 274
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,602
Number of Sequences: 5004
Number of extensions: 51911
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)