Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1051
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei...    33   0.24 
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    31   0.73 
At1g79390.1 68414.m09252 expressed protein                             29   2.2  
At4g37950.1 68417.m05365 expressed protein                             29   3.0  
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    28   5.2  
At3g28650.1 68416.m03576 DC1 domain-containing protein  similar ...    27   9.0  
At3g03530.1 68416.m00353 phosphoesterase family protein low simi...    27   9.0  
At1g06920.1 68414.m00735 ovate family protein 58% similar to ova...    27   9.0  

>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
           contains Pfam PF00641: Zn-finger in Ran binding protein
           and others; contains Prosite PS00018: EF-hand
           calcium-binding domain; similar to Zinc finger protein
           265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
           musculus}
          Length = 849

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
 Frame = +1

Query: 85  CGFVEQGQAIVCYQCNSHNDSRCIMEDLP-DTLRQPCKSTDTMCRK--ISQVVEFEMNGM 255
           C F+   + + C+ C+    +  I+E+ P +T R     TD + ++  +S    F+ +  
Sbjct: 413 CNFLNYRRNMACFHCDCKRPADAILENKPQETYRFTEAQTDRVVKRDDVSNAWNFDFDDD 472

Query: 256 PPDNRVIRGCGWDESNYKGRCYQRSGFGGRQEVCSCLTDGCNSAS 390
             D   +    + +S+ K     R G    +E    L  G   +S
Sbjct: 473 ESDGAEVAAFEYADSSKKNENLLREGLRDPEEEFGNLPPGARESS 517


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 85  CGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQP 189
           CG V++  AI C +CN   D RC    LP T+R P
Sbjct: 508 CGIVQKEYAIGCTKCNYFLDFRC--ATLPLTVRLP 540


>At1g79390.1 68414.m09252 expressed protein
          Length = 126

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +1

Query: 34  IISTMNKMAYFFVFAALCGFVE----QGQAIVCYQCNSHNDSRCIMEDLPDTL 180
           ++ T +  ++FF FAALCG +      G   V    N   ++R      PDTL
Sbjct: 15  VMKTRDSRSFFFTFAALCGVIPGVIGYGVMQVTNSSNPELEARLRKSARPDTL 67


>At4g37950.1 68417.m05365 expressed protein 
          Length = 678

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 342 KTRGLLVPDRRLQLSVVTSYGNNSDAPHASTP--EVLAITLQPTVVSRVTCVHHSSKD-N 512
           K  G +  D+R+   ++T     SD  HA  P  + L   + PT +S  T VH++ KD N
Sbjct: 258 KVHGWISSDQRIGFWMITP----SDEFHACGPIKQDLTSHVGPTTLSMFTSVHYAGKDMN 313

Query: 513 LNRK 524
            N K
Sbjct: 314 TNYK 317


>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1132

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +2

Query: 101 KAKQSSATNATVTTTPDASWR--TCRTRCGSRASPLTQC 211
           K K   A    + +  D  W    CRT+C  R S + +C
Sbjct: 222 KRKAQEALEQALASKKDRKWTFWMCRTKCSKRCSSVEEC 260


>At3g28650.1 68416.m03576 DC1 domain-containing protein  similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 665

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 85  CGFVEQGQAIVCYQCNSHNDSRCIMEDLPDTLRQP 189
           CG  E+   + C +CN   D RC    LP T+R P
Sbjct: 505 CGIDEKEVVLGCLKCNYFLDFRC--ATLPYTVRLP 537


>At3g03530.1 68416.m00353 phosphoesterase family protein low
           similarity to SP|P95246 Phospholipase C 2 precursor (EC
           3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
           profile PF04185: Phosphoesterase family
          Length = 538

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 160 EDLPDTLRQPCKSTDTMCRKISQVVEFE 243
           +D P+TL  P K   TM ++ +Q+ EF+
Sbjct: 405 QDCPETLSTPIKLRGTMAKENAQLSEFQ 432


>At1g06920.1 68414.m00735 ovate family protein 58% similar to
          ovate protein (GI:23429649) [Lycopersicon esculentum];
          contains TIGRFAM TIGR01568 : uncharacterized
          plant-specific domain TIGR01568
          Length = 315

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 94 QNRTKPRKRKSTPFYSLS 41
          +N TKPRK+ S P YS++
Sbjct: 21 KNMTKPRKKHSLPLYSIN 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,273
Number of Sequences: 28952
Number of extensions: 247376
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)