Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1049
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 137 1e-33
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 30 0.28
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 28 1.5
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 2.6
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.6
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 2.6
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 6.0
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.0
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 6.0
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 6.0
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 26 6.0
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 137 bits (332), Expect = 1e-33
Identities = 76/189 (40%), Positives = 116/189 (61%), Gaps = 4/189 (2%)
Frame = +1
Query: 115 KTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLKTFFENDIYGNFEC--FP 288
K + GK +++ VAL+L EK AF N + + + K ND++ F F
Sbjct: 28 KIITLYGKIRNE--VALLLLEKTAFDLNTIKLDQLATFLQDTKLVENNDVFHWFLSTNFQ 85
Query: 289 P-STINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTLPHLEKEQF-NLQWVYN 462
ST+ VK+T+I+PA++ H+ K+S Q+ +V ETPE+Y K+T P +E ++ +QWV N
Sbjct: 86 DCSTLPSVKSTLIWPASETHVRKYSSQKKRMVCETPEMYLKVTKPFIETQRGPQIQWVEN 145
Query: 463 ILEGKSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLYLLAIVRQRDIKSLRDLDEQHL 642
IL K+E +RIV ++ GF+++PDLKWD T L L+AIV DI S+RDL +H+
Sbjct: 146 ILTHKAEAERIVVEDPDPLNGFIVIPDLKWDRQTMSALNLMAIVHATDIASIRDLKYKHI 205
Query: 643 PLLKRIRDE 669
PLL+ IR++
Sbjct: 206 PLLENIRNK 214
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 259 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 360
D+Y ++ S INGV ++IYPA + I+K S
Sbjct: 34 DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 385 ETPELYKKLTLPHLEKEQFNLQWVYNILEGKSEQDRIVHDNKSEK 519
+ P Y LTLP+L E+ LQ++ + +G+ D + + S+K
Sbjct: 253 DLPPAYSTLTLPNLPSEE-GLQFIQKVFKGEFMFDIVFNYASSKK 296
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +1
Query: 271 NFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTLPHLEKEQ--FN 444
N P ST++ V+ + AT++ F + ++ +VLE+ +YK + F
Sbjct: 208 NLATSPASTVSRVRALYDFAATEQGELSFKKGDIILVLES--VYKDWWKGSCKNAVGIFP 265
Query: 445 LQWVYNILEGKSEQDRIVHDNKSEKEGFVLLPDL 546
+ +V ++E EQ R E++ F LP +
Sbjct: 266 VNYVQRVVEPTIEQQR--QSAHMEQQVFDALPQI 297
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 286 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTL-PHLEKEQFNL 447
PPS +N +T + + + + K++++++ + PE + L L P+ E + F +
Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 100 ITLTGKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLK 243
+T GKTA GKF+D S L E A K+ L+ +KE + +
Sbjct: 985 VTGKGKTAVDDGKFEDLSEKDLKKIEAKATKKKKLTRNEIKAKERRAR 1032
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 225 QRNSAENVFRERYLRKLRVFPAFDYKR 305
+R SA + R+R++RK+RV D +R
Sbjct: 156 ERRSAMDGLRDRHIRKVRVSQLLDLQR 182
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 84 PKQSLSILTDCHLDCCRFHC 25
P LS+L D + CC ++C
Sbjct: 139 PNTLLSLLNDEEISCCEYYC 158
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 109 TGKTACVVGKFKDKSGVALILFEKNAFKENDL 204
T KTAC GKF D + VAL++ K++ L
Sbjct: 941 TLKTACAAGKF-DAAHVALMVLSTTPLKKSCL 971
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 312 FHTVYSRRRETLEVSVNIVLEKRFQLSFFGEI 217
FH + ++RET+ V+ N + + FFGEI
Sbjct: 704 FHQQWDKQRETISVAENDLRICQKARKFFGEI 735
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +1
Query: 346 IAKFSQQEVHIVLETPELYKKLTLPHLEK---------EQFNLQWVYNILEGKSEQDRIV 498
+ K+ + ++ + E E KKL ++EK E FN + I + + EQ++++
Sbjct: 109 VRKWKEDQMKRIQERDESSKKLRESNIEKARKAIDDFYENFNDKRDKVIAKSRKEQEKLL 168
Query: 499 HDNKSEKEG 525
+N+S+ G
Sbjct: 169 EENESKSTG 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,183
Number of Sequences: 5004
Number of extensions: 60484
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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