Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1049
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    25   0.52 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.5  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 421 HLEKEQFNLQWVYNILEGKSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLY 579
           +LE + +N+ W   IL  +S   ++      + EG VLL  ++  G +  T+Y
Sbjct: 101 NLEIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMY 153


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 118 TACVVGKFKDKSG 156
           T C +GKFK ++G
Sbjct: 263 TECPIGKFKHEAG 275


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 393 WSFQHNMNFLLAKFGNMLISGW 328
           W   HN  +   ++GN  I+G+
Sbjct: 210 WRITHNFFYFDPRYGNYNINGF 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,323
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)