Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1049
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pin...    29   2.2  
At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pin...    29   2.2  
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    29   3.0  
At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family pr...    28   5.2  
At4g32320.1 68417.m04597 peroxidase family protein similar to L-...    28   6.8  
At5g20920.2 68418.m02485 eukaryotic translation initiation facto...    27   9.0  
At5g20920.1 68418.m02484 eukaryotic translation initiation facto...    27   9.0  

>At5g06570.2 68418.m00742 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 329

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 689 SKMVFFPSSLILFNNGKCCSSKSLRLFMSLCLTIANKYNVSLVRPSH 549
           S     P  +     G C  S+S   F + CLT+A+  N  +V P +
Sbjct: 71  SNRTALPVVVFFHGGGFCFGSRSWPHFHNFCLTLASSLNALVVSPDY 117


>At5g06570.1 68418.m00741 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 329

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 689 SKMVFFPSSLILFNNGKCCSSKSLRLFMSLCLTIANKYNVSLVRPSH 549
           S     P  +     G C  S+S   F + CLT+A+  N  +V P +
Sbjct: 71  SNRTALPVVVFFHGGGFCFGSRSWPHFHNFCLTLASSLNALVVSPDY 117


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 390 SFQHNMNFLLAKFGNMLISGWVDY--CSFHTVYSRRRETLEVSVNIVLEKRFQLS 232
           S  HNMN  L  +G+ L+  WV +  C  + + +R     E+S  +      QLS
Sbjct: 444 SLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLS 498


>At3g47820.1 68416.m05211 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 509

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 311 KLQ*STQP-LISILPNLASKKFILCW 385
           KL   TQP L +++PNLA K  IL W
Sbjct: 51  KLHDGTQPDLSTVIPNLAMKSTILSW 76


>At4g32320.1 68417.m04597 peroxidase family protein similar to
           L-ascorbate peroxidase [Arabidopsis thaliana]
           gi|1523789|emb|CAA66925; contains Pfam profile PF00141:
           Peroxidase
          Length = 329

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 238 LKTF-FENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQ 363
           +KTF F  D + +F+ F     +  KT ++ PAT+KH+ + S+
Sbjct: 9   VKTFLFRCDSFSSFK-FKCKFESPAKTRLLSPATEKHVVRSSR 50


>At5g20920.2 68418.m02485 eukaryotic translation initiation factor 2
           subunit 2, putative / eIF-2-beta, putative similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 267

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
 Frame = +1

Query: 466 LEGKSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLY------LLAIVRQRDIKSLRDL 627
           ++   + D I +D +  +EG VL     W+G  ++ +Y      +  I+R+ + +   D 
Sbjct: 80  VDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYDELLGRVFNILRENNPELAGDR 139

Query: 628 DEQHLPLLKRIRDEGKKTILEN 693
               +   + +R+  KKT+  N
Sbjct: 140 RRTVMRPPQVLREGTKKTVFVN 161


>At5g20920.1 68418.m02484 eukaryotic translation initiation factor 2
           subunit 2, putative / eIF-2-beta, putative similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 268

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
 Frame = +1

Query: 466 LEGKSEQDRIVHDNKSEKEGFVLLPDLKWDGLTKETLY------LLAIVRQRDIKSLRDL 627
           ++   + D I +D +  +EG VL     W+G  ++ +Y      +  I+R+ + +   D 
Sbjct: 81  VDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYDELLGRVFNILRENNPELAGDR 140

Query: 628 DEQHLPLLKRIRDEGKKTILEN 693
               +   + +R+  KKT+  N
Sbjct: 141 RRTVMRPPQVLREGTKKTVFVN 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,433,600
Number of Sequences: 28952
Number of extensions: 298319
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)