Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1048
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    69   7e-13
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    47   2e-06
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    29   0.71 
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    28   1.2  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb...    25   8.7  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 43/131 (32%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
 Frame = +3

Query: 225 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 404
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 405 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 581
           +    IL K    S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115

Query: 582 GLDATARGKLL 614
           G     R KL+
Sbjct: 116 GSSIEERAKLI 126


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 35/130 (26%), Positives = 66/130 (50%)
 Frame = +3

Query: 228 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 407
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 408 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 587
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGT-TLSEFKDFSKTL 115

Query: 588 DATARGKLLG 617
               +G+ LG
Sbjct: 116 PPELKGEALG 125


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = +3

Query: 180 QLFYRVTEMATETLVPLESNPDVLNKFLQ-------KLGVPNKWNI-VDVMGLDPETLSW 335
           Q+F   ++  +E  +PLES PD L K +        K+G    W I V V    PE   W
Sbjct: 312 QMFCYFSQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPTPEDECW 371

Query: 336 V 338
           +
Sbjct: 372 L 372


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 130 LRRYFFICHC-RCTGNLLSYFTE*LKWRPKL 219
           L++YFF C+C RC  +  +  T+  KW  +L
Sbjct: 242 LKKYFFSCYCPRCENDHTTKETDGSKWMGRL 272


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = -1

Query: 273 RAFAKTCSGHRDWIQEGLKFRSPFQSLCKITE*VTGAPAMTN---EKISTKIHN*IKNVP 103
           +A  K  + H       LK+R   Q++      + GA    N    K+  ++    K VP
Sbjct: 582 KAKGKCTTDHISAAGPWLKYRGHLQNISN--NYMIGAINAENGEANKLKDQLTGEYKTVP 639

Query: 102 NCGVDEGD*SIKW*QLDKSNY 40
           N  +D  D  I+W  L + N+
Sbjct: 640 NVAIDYRDHGIRWVTLGEQNF 660


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -2

Query: 233 FKRD*SFGRHFSHSVK*LSRLPVHRQ*QMKKYLRRFTIELKTYQIV 96
           F+R+ S  R+F++ V  + RL   R+ ++  YL + T  L  Y ++
Sbjct: 554 FEREKSTNRNFANYVHEVERLRESRKLELNGYLTKPTTRLARYPLL 599


>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 611 VGKSLKASLMLTRNWLKKAKQIHQVAEDPVNHHFISFVQKRWSIVM 748
           + +SL ++    RN L K K++   +ED  +  F+  ++ RW  ++
Sbjct: 88  IRESLDSAYTAARNQLLKEKKLSPNSEDVHSDQFLFDLKVRWREIL 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,345
Number of Sequences: 5004
Number of extensions: 66473
Number of successful extensions: 207
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)