Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1048
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               36   0.046
SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)                   30   2.3  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                28   9.3  

>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +3

Query: 348 VLSVMLLFPISDAYENHKKTEE-NEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANN 524
           V   + LF   +   + +K +  +E   + +E+  +IF+ +Q I N+C T AL+ SV  N
Sbjct: 27  VYGFIFLFKWIEERRSRRKIQHIDESFVENEEIVNDIFFAQQVIPNSCATHALL-SVLLN 85

Query: 525 TDIIELSDGHMQKFLNEAKGLDATARGKLLGKV 623
              I+L + ++ K  + +K  +   +G ++G +
Sbjct: 86  CPHIDLGE-NVSKLKDFSKNFNPENKGYVIGNL 117


>SB_56291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 617 KSLKASLMLTRNWLKKAKQIHQVAEDPVNHHFISFVQKRW 736
           KS+K  L  T  W    K +  V EDP  H   +F+  +W
Sbjct: 376 KSIKIRLYHTSGWFNGWKPVKFVVEDPKTHDLSTFMFNKW 415


>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
          Length = 720

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +3

Query: 183 LFYRVTEMATETLVPLES-NPDVLN-KFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLS 356
           L Y  TE  T  L  LE   P+  N K  +K   P    +  V+  +P +L    R   S
Sbjct: 222 LVYEYTEPQTIPLGFLEEVMPEKTNRKPPEKQPAPIHQRLTSVIRKNPLSLEHCERKPRS 281

Query: 357 VMLLFPISDAYENHKKTEENEILSKGQEVS 446
              L  IS+  E  K  +ENEILS  +E S
Sbjct: 282 STTLMAISE--ETMKNHQENEILSSVEESS 309


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 597  ARGKLLGKV*RHH*CSQGIGSRRPNK-YTKWLKIPSTIILSALSRK 731
            +R K  GK  R+H  S+  G RRPN+ Y +  ++ +  ILS L RK
Sbjct: 1006 SRDKTHGKRHRYHKLSRVCGGRRPNEPYERTARVHT--ILSTLLRK 1049


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +3

Query: 555  MQKF-LNEAKGLDATARGKLLGKV*RHH*----CSQGIGSRRPNKYTKWLKIPSTIILSA 719
            ++KF L+E KG+     GK +  V  H      C + +GS   +KY +W     T++  +
Sbjct: 844  VKKFKLHEGKGISGIVEGKKV-LVGNHSLVTDQCGEKLGSSMTDKYIQWSNESKTVVFVS 902

Query: 720  LSRK 731
            ++ K
Sbjct: 903  VNSK 906


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,618,116
Number of Sequences: 59808
Number of extensions: 455121
Number of successful extensions: 965
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)