Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1045
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    29   0.77 
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   4.1  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 559  ISPDTKIILRRRLKNISPPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRETA 401
            +S +  I+LRRRL  ++P G FK+   + ST+    +  +   + AE   E A
Sbjct: 1616 VSDNLDIVLRRRLSQVAPYGKFKH--QILSTHLVGYEKFENTKKTAEIYLEIA 1666


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 484 KDVNSTNTSDNQLIKLVSRLAEADRETATKFHPVPHNDWCVVNNSTE 344
           K V     +DN+ I  V+ L  +D  TA  F P  HND  ++   TE
Sbjct: 648 KFVKFWKINDNKKICDVAALQFSDAVTAVDFAPFFHNDELLLAVGTE 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,463
Number of Sequences: 5004
Number of extensions: 50754
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)