Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1045
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    29   4.2  
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930...    28   5.6  

>07_03_1523 +
           27432991-27433199,27433585-27434185,27434468-27434642,
           27434686-27436418,27436871-27437317
          Length = 1054

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = -2

Query: 598 LNTSLETSLRSLQISPDTKIILRRRLKNISPPGMFKNIKDVNSTNTSDNQLIKLVS---R 428
           L +SL+   R  +I  +  I LR ++     P +F+N+ ++   ++S+ +L KLV+   R
Sbjct: 800 LKSSLKVLQRLTRIEGEIGITLRYKISK--HPFLFRNLAEILGDSSSNQELRKLVAGILR 857

Query: 427 LAEADRET 404
               DR+T
Sbjct: 858 NLAIDRDT 865


>05_05_0310 -
           23991461-23991652,23991780-23991965,23992813-23993094,
           23993220-23993382,23993477-23993661,23994154-23994205,
           23994292-23994392,23995244-23995417
          Length = 444

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 502 GMFKNIKDVNSTNTSDNQLIKLVSRLAEADRETATKFHPVPHNDWCVVNNSTE 344
           G+  N + V S   S    + L+S +  A     T+F PV +N W  +N S E
Sbjct: 85  GLAYNSQSVESLKDSMFPYLPLISHVPVAPLHIPTEFSPVFNNSW--INESDE 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,768
Number of Sequences: 37544
Number of extensions: 312225
Number of successful extensions: 633
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)