Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1045
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)                    31   0.81 
SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)           31   1.1  
SB_6241| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   7.6  

>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3922

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = -2

Query: 589  SLETSLRSLQISPDTKIILRRRLKNISPPGMFKNIKDVNSTNTSDNQLIKLVS---RLAE 419
            S+E        S D ++ +    KN+  P   K  K     N    QLI  V+   R   
Sbjct: 1457 SMEIRATDSTKSNDARVRVNVEYKNMYRPEFTKCGKATIQENLLKGQLIATVTATDRDQG 1516

Query: 418  ADRETATKFHPVPHNDWCVVNNSTEDHLTTTSI 320
             + E   K  PV   D+  +NN T + +TT+S+
Sbjct: 1517 RNGEVEYKIVPVGGQDFFTINNKTGEVITTSSL 1549


>SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
 Frame = -2

Query: 565 LQISPDTKII-LRRRLKNISPPGMFKN--IKDVNSTNTSDNQLIKLVSRLAEADRETATK 395
           +Q SPD  ++ L+   ++     +F N    D  +TN S ++  +++++L  A R+T   
Sbjct: 144 VQASPDLVVVPLKPDFQSHQSRRLFTNNTANDNTTTNGSPSEYKEMINQLVVATRKTTYS 203

Query: 394 FHPVPHNDWCVVNNSTEDHLTTTSIKNRLSIKNRMFQ 284
            H  P ND    ++S   H+  T + + +    + F+
Sbjct: 204 RHTNPSNDERTGHSS---HIEKTKLTDTVDNGRKYFE 237


>SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)
          Length = 696

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
 Frame = -2

Query: 565 LQISPDTKII-LRRRLKNISPPGMFKN--IKDVNSTNTSDNQLIKLVSRLAEADRETATK 395
           +Q SPD  ++ L+   ++     +F N    D  +TN S ++  +++++L  A R+T   
Sbjct: 144 VQASPDLVVVPLKPDFQSHQSRRLFTNNTANDNTTTNGSPSEYKEMINQLVVATRKTTYS 203

Query: 394 FHPVPHNDWCVVNNSTEDHLTTTSIKNRLSIKNRMFQ 284
            H  P ND    ++S   H+  T + + +    + F+
Sbjct: 204 RHTNPSNDERTGHSS---HIEKTKLTDTVDNGRKYFE 237


>SB_6241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 239 DIIETSRSNRSSPHKDTDMPRVMLRPLIHV*RTNEHIDPDA-LGGSVVG*CYGSRT 75
           DI++        P +DTD  +V  R  +   R N+   PD+ LG    G C   +T
Sbjct: 339 DIVQKLFDEEEKPVRDTDSSQVYSRKYLEKRRWNQLSSPDSTLGNPSKGDCSNEQT 394


>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 628

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 106 DPPSASGSICSFVRHTCINGRNIT 177
           +PPS SG  C+  + +C NGR I+
Sbjct: 41  EPPSCSGRSCNSGQFSCSNGRCIS 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,746,005
Number of Sequences: 59808
Number of extensions: 379500
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)