Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1045
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    29   2.9  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    29   2.9  
Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 520 KNISPPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRETATKFHPVPHNDW 368
           + ++PP     I+D  S N+  + L K  +R AEA+R T  K        W
Sbjct: 662 EKVAPPPPRAKIEDTGSGNSFADMLQKRAARSAEANRGTFEKKESEAEMQW 712


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 520 KNISPPGMFKNIKDVNSTNTSDNQLIKLVSRLAEADRETATKFHPVPHNDW 368
           + ++PP     I+D  S N+  + L K  +R AEA+R T  K        W
Sbjct: 662 EKVAPPPPRAKIEDTGSGNSFADMLQKRAARSAEANRGTFEKKESEAEMQW 712


>Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical
           protein R17.1 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 121 SGSICSFVRHTCINGRNITLGMSVSLCGEDLLLLDVSII---SMLPTNDNVIF 270
           S  +  F   TC N +NI +    S+  EDLL+ ++S I   ++LP  D  +F
Sbjct: 151 SPRVQDFQAVTCCNFKNIMIKQDESIKLEDLLVSNISEILMHTLLPLTDICLF 203


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical protein
            F09C3.1 protein.
          Length = 1391

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -2

Query: 469  TNTSDNQLIKLVSRLAE---ADRETATKFHPVPHNDWCVVNNSTEDHLTTTSIKNRLSI 302
            T  S+NQL++L+  +A+   +D     + HP P+    ++ + T+ HL T + K  + +
Sbjct: 1097 TEESENQLVQLIDSIADVATSDGVVMLQLHPSPNE---MLPDGTQAHLFTRAKKELVEL 1152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,521,223
Number of Sequences: 27780
Number of extensions: 284800
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)