Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1044
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.15 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   7.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 472 VIEPNTELDRNGRSVSQPASTTDISTPVSGSVSS 371
           V+E N+    N R  S P+S+T  S P  G+ ++
Sbjct: 504 VVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAA 537


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 3   HPPAGTRXTPPIQLSRVLQGHRQEVCGLKWSP 98
           + P+  R    I+ + V+ G ++ VCG+K  P
Sbjct: 517 YEPSACRPRHEIRSTDVIPGTQEHVCGVKGIP 548


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = -2

Query: 193 TCAEYVCTGDVECIDQTKSLLSLPPEANDWPSGDH 89
           TC  +  +G V C+   K +     + + WP   H
Sbjct: 148 TCLVF-SSGSVSCVPSVKHVAKCATDFSSWPYDTH 181


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 572 GRSCSPCVRAFWKKHSKNRSVSSPAPVTMASPS 474
           G SC P   A     SK RSVS  +  T +S S
Sbjct: 153 GSSCGPGAAAAAALLSKRRSVSECSLGTASSTS 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,450
Number of Sequences: 438
Number of extensions: 3995
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)