Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1043
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 111 3e-25
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 105 1e-23
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 1.8
03_06_0610 + 35052455-35053429,35054936-35055511 29 1.8
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 3.1
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 4.1
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 27 7.2
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 27 7.2
06_03_1332 - 29403320-29407804 26 9.5
01_06_1308 - 36159406-36159536,36159642-36160616,36161117-361612... 26 9.5
01_01_0115 - 856957-858055,858479-858538,858802-859583 26 9.5
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 111 bits (266), Expect = 3e-25
Identities = 52/72 (72%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Frame = +2
Query: 188 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 364
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 365 SLMMXGRXNGXK 400
SLMM GR NG K
Sbjct: 70 SLMMHGRNNGKK 81
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 105 bits (252), Expect = 1e-23
Identities = 49/71 (69%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Frame = +2
Query: 191 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 367
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 368 LMMXGRXNGXK 400
LMM GR NG K
Sbjct: 72 LMMHGRNNGKK 82
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 123 T*PRQAAWLWKPCLYHKPPTF 185
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -1
Query: 241 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 74
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 73 *K 68
K
Sbjct: 476 AK 477
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 122 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 292
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -1
Query: 277 VLLFNGNVVLQRHIRDLHIVATPSAEK 197
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 245 LQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERL 358
LQD+ V E YAKY P A A ++ A P+ R+
Sbjct: 122 LQDFKKVNEIYAKYFPAPAP--ARSTYQVAALPLNARI 157
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 260 SVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLM 373
S+K++Y + L G + CP+ R NS++
Sbjct: 1445 SLKQRYVRRLGFETGHIVDPDLGELLCPVCRRFANSIL 1482
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 195 SFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMXT 317
+FS G T S + FP S Q +YL + GM T
Sbjct: 1268 AFSIWGCPTFLSSYYSTSLSCFPFPSSLQKMYLSDVRGMET 1308
>01_06_1308 -
36159406-36159536,36159642-36160616,36161117-36161245,
36161403-36161647,36161730-36161881,36161982-36162083
Length = 577
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 80 NRKVPIMAEENWNDDVAEAGSVVVETMSLPQAAD 181
+++VP++ E WN D E + V+T P +D
Sbjct: 159 HKEVPVIFGEWWNADTEEVVNQAVQTGGGPNVSD 192
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 242 SLQDYISVKEKYAKYLPHSAGRY 310
+LQ ++SV+ +A +PH+AGR+
Sbjct: 12 ALQVFVSVQFVFAVLVPHAAGRH 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,338,436
Number of Sequences: 37544
Number of extensions: 169363
Number of successful extensions: 411
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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