Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1043
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               129   7e-31
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   2.4  
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)                   28   3.2  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     27   5.6  
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)                   27   7.4  
SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)                   27   7.4  
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)        27   7.4  
SB_2673| Best HMM Match : UPF0154 (HMM E-Value=1.9)                    26   9.8  
SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10)                   26   9.8  
SB_46838| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.2)                  26   9.8  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  129 bits (312), Expect = 7e-31
 Identities = 59/86 (68%), Positives = 71/86 (82%)
 Frame = +2

Query: 143 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 322
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128

Query: 323 FRKAQCPIVERLTNSLMMXGRXNGXK 400
           FRKAQCPIVER+TNS+MM GR NG K
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKK 154



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +2

Query: 143 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 247
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 182 IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 313
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
          Length = 553

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 51  TVRGYNFYLVIEKYQSWPR--RTGMTT*PR 134
           +V G NF++V++ +  WP    T  TT P+
Sbjct: 242 SVHGVNFFVVVDAHSKWPEIIATSSTTAPK 271


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 206 RWSCYDVQVSDMSLQDYISVKEKYAKYLP 292
           RWSC   Q  + +++ Y+  KE  ++ LP
Sbjct: 59  RWSCVTYQAKNQAVECYLPGKEPGSRVLP 87


>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +2

Query: 80  NRKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYI 259
           +R+  +  E+ W+  ++  G +   T   P    +   +L   WS     V D ++ ++I
Sbjct: 619 DRQQRVRIEDEWSSQISPRGGIPQGTRLAPLLFAVLVNRLADEWSTRLKYVDDATVLEFI 678

Query: 260 SVKE-KYAKYLPHSAGRYAHKR 322
                 Y   +     RYA +R
Sbjct: 679 PRNSPSYLPIVASGISRYATQR 700


>SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)
          Length = 294

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 60  GYNFYLVIEKYQSWPRRTGMTT 125
           GY  Y  I  Y  WP  T MTT
Sbjct: 44  GYQLYKSITFYYEWPTVTAMTT 65


>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
          Length = 538

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 60  GYNFYLVIEKYQSWPRRTGMTT 125
           GY  Y  I  Y  WP  T MTT
Sbjct: 44  GYQLYKSITFYYEWPTVTAMTT 65


>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 92  PIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKL--FGRWSCYDVQVSDMSLQ 250
           P   E+ WNDD  E   V+   +SLP+   + E+ L  +  +S  +VQ+     Q
Sbjct: 210 PHFVEKEWNDDTYE---VMRGMISLPEVIAVGEVGLDFYRNYSKKEVQIEAFEKQ 261


>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 286 IFCVLLFNGNVVLQRHIRDLH 224
           IFC  LF+G  +L+RH+   H
Sbjct: 405 IFCRKLFHGKSLLERHVSKRH 425


>SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)
          Length = 416

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +2

Query: 89  VPIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK 268
           +PI+  E  NDDVA  GS +          D P IK    +  Y +  +  +  +Y   K
Sbjct: 281 LPIVLGEGINDDVAIPGSYI-------NIKDFPNIKALSEYIKY-LDKNHTAYNEYFQWK 332

Query: 269 EKY 277
            KY
Sbjct: 333 RKY 335


>SB_2673| Best HMM Match : UPF0154 (HMM E-Value=1.9)
          Length = 322

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 150 WK---PCLYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMXTS 320
           WK   PCL      F + +      A MC+ L  + + +      T+  ++ + A     
Sbjct: 78  WKDEGPCLVEVNELFGEMTRKPSDCAMMCEGLEAVPKVS----GLTREEFIEKYAYKGRP 133

Query: 321 VSVKPSAQSWSALQT 365
           V V  +AQ+WSAL T
Sbjct: 134 VVVTDAAQNWSALDT 148


>SB_56647| Best HMM Match : rve (HMM E-Value=1.5e-10)
          Length = 1347

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +2

Query: 74  FSNRKVPIMAEENWNDDVAEA-----GSVVVETMSLPQAADIPEIKLFGRWSC 217
           FSN+ V    EE      A+      GS   +  S  QAA  PE+ L G ++C
Sbjct: 740 FSNQVVASQMEEPQGSTSAQPAGTANGSAEHDKQSAEQAAHEPELSLIGPYTC 792


>SB_46838| Best HMM Match : Gp-FAR-1 (HMM E-Value=1.2)
          Length = 512

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
 Frame = +2

Query: 74  FSNRKVPIMAEENWNDDVAEA-----GSVVVETMSLPQAADIPEIKLFGRWSC 217
           FSN+ V    EE      A+      GS   +  S  QAA  PE+ L G ++C
Sbjct: 234 FSNQVVASQMEEPQGSTSAQPAGTANGSAEHDKQSAEQAAHEPELSLIGPYTC 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,767,506
Number of Sequences: 59808
Number of extensions: 191225
Number of successful extensions: 471
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)