Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1043
         (400 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     24   1.8  
AY176048-1|AAO19579.1|  521|Anopheles gambiae cytochrome P450 CY...    23   3.1  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    22   7.2  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    22   9.5  

>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = +2

Query: 113 WNDDVAEAGSVVVETM--SLPQAAD--IPEI 193
           W++D AEAG+ V E +  ++P+A    +PE+
Sbjct: 640 WDNDDAEAGAAVPEAVLDAIPEAMPEAVPEV 670


>AY176048-1|AAO19579.1|  521|Anopheles gambiae cytochrome P450
           CYP12F4 protein.
          Length = 521

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 66  NFYLVIEKYQSWPRRTGM 119
           +F  V+     WPRRTGM
Sbjct: 104 DFEKVLRSEGPWPRRTGM 121


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 240 CLCRTTFPLKRSTQNIYLIQLAGMXTSVS 326
           CL   TFP     Q + LI   G  + VS
Sbjct: 459 CLVNGTFPAAWKRQRLVLIPKPGKPSGVS 487


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 240 CLCRTTFPLKRSTQNIYLIQLAG 308
           CL R TFP +   Q + L+   G
Sbjct: 473 CLTRGTFPSEWKRQRLVLLSKTG 495


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,023
Number of Sequences: 2352
Number of extensions: 6281
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 31639662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)