Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1043
(400 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 136 3e-32
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 136 3e-32
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 136 3e-32
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 136 3e-32
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 132 5e-31
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 44 2e-04
AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein pr... 30 2.5
AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens ... 30 3.3
AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens ... 30 3.3
AL365496-6|CAM19867.1| 719|Homo sapiens protocadherin 15 protein. 28 9.9
AL365496-5|CAM19868.1| 1785|Homo sapiens protocadherin 15 protein. 28 9.9
AL365496-4|CAM19871.1| 981|Homo sapiens protocadherin 15 protein. 28 9.9
AL365496-2|CAM19870.1| 650|Homo sapiens protocadherin 15 protein. 28 9.9
AL360214-9|CAM21540.1| 719|Homo sapiens protocadherin 15 protein. 28 9.9
AL360214-8|CAM21538.1| 1785|Homo sapiens protocadherin 15 protein. 28 9.9
AL360214-7|CAM21539.1| 981|Homo sapiens protocadherin 15 protein. 28 9.9
AL360214-5|CAM21541.1| 650|Homo sapiens protocadherin 15 protein. 28 9.9
AL356114-9|CAM15122.1| 719|Homo sapiens protocadherin 15 protein. 28 9.9
AL356114-8|CAM15119.1| 1785|Homo sapiens protocadherin 15 protein. 28 9.9
AL356114-7|CAM15121.1| 981|Homo sapiens protocadherin 15 protein. 28 9.9
AL356114-5|CAM15118.1| 650|Homo sapiens protocadherin 15 protein. 28 9.9
AL353784-8|CAM16786.1| 719|Homo sapiens protocadherin 15 protein. 28 9.9
AL353784-7|CAM16789.1| 1785|Homo sapiens protocadherin 15 protein. 28 9.9
AL353784-6|CAM16788.1| 981|Homo sapiens protocadherin 15 protein. 28 9.9
AL353784-4|CAM16790.1| 650|Homo sapiens protocadherin 15 protein. 28 9.9
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 136 bits (329), Expect = 3e-32
Identities = 61/78 (78%), Positives = 69/78 (88%)
Frame = +2
Query: 167 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 346
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 347 VERLTNSLMMXGRXNGXK 400
VERLTNS+MM GR NG K
Sbjct: 69 VERLTNSMMMHGRNNGKK 86
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 136 bits (329), Expect = 3e-32
Identities = 61/78 (78%), Positives = 69/78 (88%)
Frame = +2
Query: 167 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 346
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 347 VERLTNSLMMXGRXNGXK 400
VERLTNS+MM GR NG K
Sbjct: 69 VERLTNSMMMHGRNNGKK 86
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 136 bits (329), Expect = 3e-32
Identities = 61/78 (78%), Positives = 69/78 (88%)
Frame = +2
Query: 167 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 346
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 347 VERLTNSLMMXGRXNGXK 400
VERLTNS+MM GR NG K
Sbjct: 69 VERLTNSMMMHGRNNGKK 86
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 136 bits (329), Expect = 3e-32
Identities = 61/78 (78%), Positives = 69/78 (88%)
Frame = +2
Query: 167 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 346
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 347 VERLTNSLMMXGRXNGXK 400
VERLTNS+MM GR NG K
Sbjct: 69 VERLTNSMMMHGRNNGKK 86
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 132 bits (318), Expect = 5e-31
Identities = 59/78 (75%), Positives = 67/78 (85%)
Frame = +2
Query: 167 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 346
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA FRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANAFRKAQCPI 68
Query: 347 VERLTNSLMMXGRXNGXK 400
VERLTNS+MM GR NG K
Sbjct: 69 VERLTNSMMMHGRNNGKK 86
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +2
Query: 332 AQCPIVERLTNSLMMXGRXNGXK 400
AQCPIVERLTNS+MM GR NG K
Sbjct: 1 AQCPIVERLTNSMMMHGRNNGKK 23
>AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein
protein.
Length = 1640
Score = 30.3 bits (65), Expect = 2.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 389 CXARASLESL*GAPRLGTGLYGNACXHTC 303
C ++ E G R G G YG AC H C
Sbjct: 1425 CHNNSTCEPATGTCRCGPGFYGQACEHPC 1453
>AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ44741 fis, clone BRACE3027931. ).
Length = 398
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 MCKSLICLCRTTFPLKRSTQNIYLIQLA 305
+CKS C+C +T + ST+ Y QLA
Sbjct: 259 VCKSTYCICNSTHCVCNSTRTAYATQLA 286
>AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens
cDNA FLJ12986 fis, clone NT2RP3000055. ).
Length = 171
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 222 MCKSLICLCRTTFPLKRSTQNIYLIQLA 305
+CKS C+C +T + ST+ Y QLA
Sbjct: 32 VCKSTYCICNSTHCVCNSTRTAYATQLA 59
>AL365496-6|CAM19867.1| 719|Homo sapiens protocadherin 15 protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 619 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 653
>AL365496-5|CAM19868.1| 1785|Homo sapiens protocadherin 15 protein.
Length = 1785
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 1685 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 1719
>AL365496-4|CAM19871.1| 981|Homo sapiens protocadherin 15 protein.
Length = 981
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 881 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 915
>AL365496-2|CAM19870.1| 650|Homo sapiens protocadherin 15 protein.
Length = 650
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 550 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 584
>AL360214-9|CAM21540.1| 719|Homo sapiens protocadherin 15 protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 619 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 653
>AL360214-8|CAM21538.1| 1785|Homo sapiens protocadherin 15 protein.
Length = 1785
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 1685 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 1719
>AL360214-7|CAM21539.1| 981|Homo sapiens protocadherin 15 protein.
Length = 981
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 881 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 915
>AL360214-5|CAM21541.1| 650|Homo sapiens protocadherin 15 protein.
Length = 650
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 550 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 584
>AL356114-9|CAM15122.1| 719|Homo sapiens protocadherin 15 protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 619 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 653
>AL356114-8|CAM15119.1| 1785|Homo sapiens protocadherin 15 protein.
Length = 1785
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 1685 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 1719
>AL356114-7|CAM15121.1| 981|Homo sapiens protocadherin 15 protein.
Length = 981
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 881 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 915
>AL356114-5|CAM15118.1| 650|Homo sapiens protocadherin 15 protein.
Length = 650
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 550 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 584
>AL353784-8|CAM16786.1| 719|Homo sapiens protocadherin 15 protein.
Length = 719
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 619 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 653
>AL353784-7|CAM16789.1| 1785|Homo sapiens protocadherin 15 protein.
Length = 1785
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 1685 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 1719
>AL353784-6|CAM16788.1| 981|Homo sapiens protocadherin 15 protein.
Length = 981
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 881 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 915
>AL353784-4|CAM16790.1| 650|Homo sapiens protocadherin 15 protein.
Length = 650
Score = 28.3 bits (60), Expect = 9.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 83 RKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPE 190
+K P M EE +++ E+G VE + P+A DIPE
Sbjct: 550 QKEPKMEEEEHSEE-EESGPAPVEESTDPEAQDIPE 584
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,773,498
Number of Sequences: 237096
Number of extensions: 911660
Number of successful extensions: 1669
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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