Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1043
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   3.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.2  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   6.9  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 245 ETYQRLAHRSNSICRKA*FQECRRLVVKTWFP 150
           + Y+RL H  N I ++  F    RL   T+ P
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCP 271


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 375 IIREFVRRSTIGHWAL 328
           +++E +R+   GHW +
Sbjct: 66  LMKERIRQKAAGHWVI 81


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 375 IIREFVRRSTIGHWAL 328
           +++E +R+   GHW +
Sbjct: 66  LMKERIRQKAAGHWVI 81


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = -2

Query: 375 IIREFVRRSTIGHWAL 328
           +++E +R+   GHW +
Sbjct: 66  LMKERIRQKAAGHWVI 81


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 74  FSNRKVPIMAEENWN 118
           F N+K+P+   E W+
Sbjct: 550 FKNKKLPVFLAEIWD 564


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 163 FTTSRRHS*NQAFRQMELLRCASL*YVSAGLHFR*REVR 279
           FTT +  S  + FR+ + L  A     S+ LH    +V+
Sbjct: 16  FTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVK 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,083
Number of Sequences: 438
Number of extensions: 1707
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)