Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1043
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 106 6e-24
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 104 2e-23
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 104 2e-23
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote... 27 3.5
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA... 27 3.5
At5g01940.1 68418.m00113 eukaryotic translation initiation facto... 27 4.6
At2g24900.1 68415.m02977 hypothetical protein includes At2g24900... 26 8.0
At2g01720.1 68415.m00100 ribophorin I family protein similar to ... 26 8.0
>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
to GP:3043428
Length = 207
Score = 106 bits (254), Expect = 6e-24
Identities = 50/72 (69%), Positives = 59/72 (81%), Gaps = 1/72 (1%)
Frame = +2
Query: 188 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 364
E+KLF RWS DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 365 SLMMXGRXNGXK 400
SLMM GR NG K
Sbjct: 78 SLMMHGRNNGKK 89
>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 104 bits (250), Expect = 2e-23
Identities = 51/78 (65%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Frame = +2
Query: 170 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 346
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 347 VERLTNSLMMXGRXNGXK 400
VERLTNSLMM GR NG K
Sbjct: 72 VERLTNSLMMHGRNNGKK 89
>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
[Arabidopsis thaliana]
Length = 207
Score = 104 bits (250), Expect = 2e-23
Identities = 51/78 (65%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Frame = +2
Query: 170 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPI 346
Q A E+KLF RW+ DV V+D+SL DYI V+ K+A ++PH+AGRY+ KRFRKAQCPI
Sbjct: 12 QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPI 71
Query: 347 VERLTNSLMMXGRXNGXK 400
VERLTNSLMM GR NG K
Sbjct: 72 VERLTNSLMMHGRNNGKK 89
>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
low similarity to SP|P24640|LIP3_MORSP Lipase 3
precursor (EC 3.1.1.3) (Triacylglycerol lipase)
{Moraxella sp}; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 328
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 165 YHKPPTFLKSSFSADGVATMCKSLI 239
++KPP ++ S F+ D + MCK +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215
>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
family protein low similarity to skinny hedgehog
[Drosophila melanogaster] GI:15420842; contains Pfam
profile PF03062: MBOAT family
Length = 533
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 141 AWLWKPCLYHKPPTFLKSSFSA 206
+W W CL+ P LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447
>At5g01940.1 68418.m00113 eukaryotic translation initiation factor
2B family protein / eIF-2B family protein similar to
SP|P41035 Eukaryotic translation initiation factor 2
subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
Pfam profile PF01873: Domain found in IF2B/IF5
Length = 231
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 204 ADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMXTSVSV 329
A+G T+C + LCRT + R ++ LA M T VS+
Sbjct: 109 AEGTITVCLNFADLCRT---MHRKPDHVMKFLLAQMETKVSL 147
>At2g24900.1 68415.m02977 hypothetical protein includes At2g24900,
At5g35040, At3g30500, At4g07690
Length = 248
Score = 26.2 bits (55), Expect = 8.0
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 107 ENWNDDVAEAGSVVVETMSLPQA--ADIPEIKLFGRWSCYDVQVSDMSLQDYI 259
ENW ++E M+ + +D E LF R++ YD D S DY+
Sbjct: 80 ENWGFVRTTTHKYMIEFMNATEVTHSDPRETVLFNRFTPYDYITEDTSDTDYL 132
>At2g01720.1 68415.m00100 ribophorin I family protein similar to
SP|P04843 Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 67 kDa subunit precursor (EC
2.4.1.119) (Ribophorin I) {Homo sapiens}; contains Pfam
profile PF04597: Ribophorin I
Length = 464
Score = 26.2 bits (55), Expect = 8.0
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +2
Query: 185 PEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 364
P LFG WS + + L+DY+ +YL + G CP+VE + N
Sbjct: 317 PRYPLFGGWSATFIIGYRVPLEDYLFEASDGRRYLNFTFG-----------CPLVETIVN 365
Query: 365 SL 370
L
Sbjct: 366 KL 367
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,402,049
Number of Sequences: 28952
Number of extensions: 133053
Number of successful extensions: 317
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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