Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1041
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0228 - 27010982-27011272,27011401-27011506,27011616-270117...    30   1.9  
12_01_0467 + 3657320-3657992,3658077-3658342                           30   2.5  
11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741     30   2.5  
06_01_0553 + 3942907-3943617                                           28   7.5  

>02_05_0228 -
           27010982-27011272,27011401-27011506,27011616-27011767,
           27011919-27011930
          Length = 186

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 34  LHTIRMVPLVLPSWAIAIHFAK*LKARCLTSAAKH 138
           LH  R+ PL++PSW  + H A      C    A H
Sbjct: 151 LHPHRIAPLIIPSWVTSFHIAASSGFVCSRPLADH 185


>12_01_0467 + 3657320-3657992,3658077-3658342
          Length = 312

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 543 TIFFNANSKTHNGTKGKGYNVFFLVLHLSVGYDGSRDLYLDRSVXKNLHDYAI 701
           T+FF++    H  T+G+ Y++ +  L    G+D +   Y       NLHDY+I
Sbjct: 28  TVFFDSRRGIHWMTQGEWYSITYEALATLWGFDENWMRYF-----ANLHDYSI 75


>11_04_0048 + 12792270-12792276,12793453-12793697,12793866-12794741
          Length = 375

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -1

Query: 323 TNCIRK*TEELF*LKWEKKPISNHRLSILNANRRFWNEWNETPHCSLSGNPVKVLEHIKE 144
           T CI     E+   K E+K   +H++S  NA          TP C +    +   E ++E
Sbjct: 2   TRCISTNLAEVLQKKVEQKEEESHKISHDNAFLE------STPSCEVGSTSI---EEVEE 52

Query: 143 NECLAADVKQRALSYLA 93
            +C+A+++      Y+A
Sbjct: 53  KDCVASELSMEEKEYVA 69


>06_01_0553 + 3942907-3943617
          Length = 236

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -1

Query: 266 PISNHRLSILNANRRFWNEWNETPHCSLSGNPVKVLEHIKENECLAADVKQRALSYLAK* 87
           PI+ HRL IL   RR        P  S S +   V    +    LAA  ++ ALS  A+ 
Sbjct: 48  PIAKHRLEILKLARR-----ESPPSSSSSSSLAAVRLPWRATRLLAAAARRAALSLAARL 102

Query: 86  IAIAQEGR 63
            ++A+  R
Sbjct: 103 RSVARRDR 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,645,217
Number of Sequences: 37544
Number of extensions: 419657
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)