Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1041
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    22   5.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.6  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   7.6  

>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 63  SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 100


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 63  SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 100


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 63  SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 100


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 63  SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 100


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 63  SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 100


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 63  SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 100


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 63  SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 100


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 479 SLKLAYFPYDQFICV 435
           ++ + YFP+DQ  C+
Sbjct: 152 TIDVTYFPFDQQTCI 166


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 312 SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 349


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 312 SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 349


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 312 SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 349


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 312 SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 349


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 312 SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 349


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 312 SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 349


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 312 SRERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 349


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 664 IVLSXRISTTMRSCAFVKFYKGDAXLRSFGELHHYWTCFDIL 789
           ++ S RIS T+     +K Y  D  + S     + WT  D++
Sbjct: 148 VLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLV 189


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 664 IVLSXRISTTMRSCAFVKFYKGDAXLRSFGELHHYWTCFDIL 789
           ++ S RIS T+     +K Y  D  + S     + WT  D++
Sbjct: 148 VLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLV 189


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 699 SHSRGDSSRQNDPSRDLWIRHIQLIDEVPKKIHYNLYP 586
           S  R    R+   SR+  I     I+++P  ++Y  +P
Sbjct: 296 SKERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGNFP 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,661
Number of Sequences: 438
Number of extensions: 5363
Number of successful extensions: 34
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)