Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1040
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.79 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    25   0.79 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   1.8  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   3.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   3.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.2  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   5.5  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   5.5  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 290 IQVLNFHLSLLILRISEVFG 349
           I  L+ HLS L+ R +E+FG
Sbjct: 578 ICTLHHHLSKLVTRFNEIFG 597



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 290 IQVLNFHLSLLILRISEVFG 349
           I  L+ HLS LI   +E+FG
Sbjct: 854 ICTLHHHLSKLIRLFNEIFG 873


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 290 IQVLNFHLSLLILRISEVFG 349
           I  L+ HLS L+ R +E+FG
Sbjct: 222 ICTLHHHLSKLVTRFNEIFG 241


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 309 IYPCLYSAFRRYLGVCSKINKISFKAHIRSNKFNF*RNGNMFNTNRSN 452
           +Y  + S FR    +CS+ N+  +    R+  F+   N    +T R+N
Sbjct: 350 LYNLMSSKFRTGFIICSESNRKFYFKRARNGTFSTTANSCRSSTFRNN 397


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -2

Query: 204 NVAWFSPPSNKTAKSS*K--CFFCHV*NKFKMNSS---RSETHTYTYK*FYKFTSPDFSV 40
           N A  SP S  +  S+    C F +  N+F  +S    + ET  Y  +  Y+F  P F+ 
Sbjct: 156 NEASMSPQSTSSNNSASPKACQFLY--NQFPGSSQVVVKDETCQYDTESSYQFNDPQFNF 213

Query: 39  SY 34
           +Y
Sbjct: 214 NY 215


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = -2

Query: 204 NVAWFSPPSNKTAKSS*K--CFFCHV*NKFKMNSS---RSETHTYTYK*FYKFTSPDFSV 40
           N A  SP S  +  S+    C F +  N+F  +S    + ET  Y  +  Y+F  P F+ 
Sbjct: 176 NEASMSPQSTSSNNSASPKACQFLY--NQFPGSSQVVVKDETCQYDTESSYQFNDPQFNF 233

Query: 39  SY 34
           +Y
Sbjct: 234 NY 235


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/57 (22%), Positives = 28/57 (49%)
 Frame = +1

Query: 61  KLVKSFICVCVCLATRAVHLELVSDMTKEAFLAALSRFIARRGKPRNIFSDNGTTFV 231
           +L  S++ V + + ++ + L  +   T +     L    +   KP+ + SD+GT F+
Sbjct: 213 RLGASYVFVVIDVFSKFLKLYPLRKATAKIAAKRLIEDFSGYIKPKCVLSDHGTQFI 269


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 433 LTQIEAILNSRPLTPL 480
           L++I+  LNS+PL P+
Sbjct: 103 LSKIDETLNSKPLKPV 118


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 433 LTQIEAILNSRPLTPL 480
           L++I+  LNS+PL P+
Sbjct: 99  LSKIDETLNSKPLKPV 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,947
Number of Sequences: 336
Number of extensions: 3400
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)