Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1040
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   2.0  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           27   2.0  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   4.5  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.9  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   7.9  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   7.9  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   7.9  

>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +2

Query: 515 QLISLSDDQ*YLRHILKYQIVPISLVCRGFAE*NISSNTFGKDSLKNTSLGCNKNLNGVK 694
           +L    D + Y+RH++  ++ P+S  C GF   N S       +  N+ +  N   NG++
Sbjct: 379 ELFQCEDSKYYVRHLVNEEVFPLS-DC-GFGPSNTSDGMCELYAYLNSPVRVNGTSNGIQ 436

Query: 695 H 697
           +
Sbjct: 437 N 437


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +1

Query: 400 TNLTFEEMATCLTQIEAILNSRPLTPLSDDPSDLTPLTPAHFLIGRSVIFAPHPQVPDST 579
           T ++ +E A+ LT +    +   L  +S   S    L   H L  RS  F P P VP+S 
Sbjct: 73  TTVSLKESAS-LTSLSNNKSVSNLNSISGASSPSGSLVNLHSLT-RSASFVPQPSVPNSG 130

Query: 580 NITSLQRFRRI 612
            +++    R I
Sbjct: 131 QLSNADMSRHI 141


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 583 ITSLQRFRRIE-YLKQHFWKRFSQEYISW 666
           IT  + + R++ Y ++H+W      YI W
Sbjct: 151 ITECKSYERLKSYFRKHYWPTLKANYILW 179


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 352 SAVKSTKYHLKRTLGLTNLTFEEMATCLTQIEA 450
           SA +  K+H   T     + F ++ +CLT +++
Sbjct: 147 SAFEENKFHFAATESFFEMAFSKIDSCLTSVQS 179


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 205 FSDNGTTFVGAFNELARFLSQDLE 276
           +  NG T V AFNE A F S DL+
Sbjct: 213 YPKNGQTDVFAFNEPAYFGSSDLD 236


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 409 TFEEMATCLTQ-IEAILNSRPLTPLSDDPSDLTPL 510
           T EE   C+ Q +++  + +PL  + DD  DLT L
Sbjct: 105 TEEEYLWCIEQQLKSFPSGKPLNMILDDGGDLTAL 139


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 482 DRGVKGLEFRIASICVKHVAISSKVKFVRPNVRFK*YFVDFTA 354
           DRG KG+ F ++S+ +  + I+ ++  V   + +K Y   F+A
Sbjct: 227 DRGTKGISFILSSMVLHIIPITLEIAMVSGILTYK-YGPSFSA 268


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 205 FSDNGTTFVGAFNELARFLSQDLE 276
           +  NG T V AFNE A F S DL+
Sbjct: 213 YPKNGQTDVFAFNEPAYFGSSDLD 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,740
Number of Sequences: 5004
Number of extensions: 57176
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)