Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1040
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0249 - 1913739-1914755                                           29   2.7  
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509...    29   3.5  
12_01_0248 - 1841454-1841820,1842223-1842728                           29   4.7  
03_01_0594 - 4385291-4385503,4385647-4385829,4385944-4386117,438...    29   4.7  
12_01_0244 - 1821413-1822144                                           28   6.2  
11_01_0247 - 1892248-1892602,1892835-1893112,1893371-1893392,189...    28   6.2  
07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188     28   6.2  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    28   8.2  

>11_01_0249 - 1913739-1914755
          Length = 338

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 334 FGGIWESAVKSTKYHLKRTLGLTNLTFEEMAT 429
           FG  WE  +   ++H+KR   +  LT+EE+ T
Sbjct: 199 FGPYWEHVLGYWRWHVKRPSQVLFLTYEELTT 230


>05_04_0176 +
           18749945-18749969,18750186-18750751,18750876-18750944,
           18752128-18752325,18752791-18752922,18753658-18753744,
           18753845-18754288,18754644-18754811,18755129-18755359,
           18755893-18756008,18756125-18756407
          Length = 772

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 675 LLQPRDVFLRESFPK--VLLEIFYSAKPLQTSDIGTIWYLRMWRK 547
           +LQ +     E  P+  ++L +  S +PL  S++G + Y++ W+K
Sbjct: 298 ILQRQQRLTEEYVPRADLILFVLSSDRPLTDSEVGFLQYVQQWKK 342


>12_01_0248 - 1841454-1841820,1842223-1842728
          Length = 290

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 334 FGGIWESAVKSTKYHLKRTLGLTNLTFEEMAT 429
           FG  WE  +   ++H KR   +  LT+EE+ T
Sbjct: 189 FGPYWEHVLGYWRWHTKRPSQVLFLTYEELTT 220


>03_01_0594 -
           4385291-4385503,4385647-4385829,4385944-4386117,
           4386213-4386373,4386470-4386551,4386626-4386658,
           4386755-4387161,4387237-4387381,4387483-4387587,
           4387704-4387826,4387908-4388027,4388118-4388237,
           4388569-4388775,4388857-4389036,4389151-4389285,
           4389382-4389519,4389630-4389728,4389832-4389951,
           4390029-4390091
          Length = 935

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 533 PIRK*AGVNGVRSDGSSDRGVKGLEFRIASICVKHVAISSKVKFV 399
           P+ K   +  V SDG+  R  KG   +I S+C     IS KV+ +
Sbjct: 409 PVDKRTAITYVDSDGNWFRVSKGAPEQILSLCYNKDDISEKVQLI 453


>12_01_0244 - 1821413-1822144
          Length = 243

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 331 HFGGIWESAVKSTKYHLKRTLGLTNLTFEEMA 426
           HFG  WE  +   ++H++    +  LT+EE+A
Sbjct: 103 HFGPFWEHVLGYWRWHVEMPSQVFFLTYEELA 134


>11_01_0247 -
           1892248-1892602,1892835-1893112,1893371-1893392,
           1894613-1895268
          Length = 436

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 331 HFGGIWESAVKSTKYHLKRTLGLTNLTFEEMA 426
           HFG  WE  +   ++H++    +  LT+EE+A
Sbjct: 338 HFGPFWEHVLGYWRWHVETPSQVFFLTYEELA 369


>07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188
          Length = 736

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 118 LELVSDMTKEAFLAALSRFIARRGKPRNIFSDNGTTFVG 234
           + + +D  ++ F+  + RF    G P  I +DNGT F G
Sbjct: 491 ITITADKARDFFINIVHRF----GVPNRIITDNGTQFTG 525


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 499 LTPLTPAHFLIGRSVIFAPHPQVPDSTNITS-LQRFRRIEYLKQHFWKRFSQE 654
           ++ L P+ FL+       P PQ P  T   S LQ +R +E+ +    + F +E
Sbjct: 108 VSTLDPSSFLLSSPTAPPPRPQAPSPTAPPSLLQMWRELEHRRSDADQPFDRE 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,052,270
Number of Sequences: 37544
Number of extensions: 325348
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)