Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1040
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.91 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +1

Query: 409  TFEEMATCLTQIEAILNSRPLTPLSDDPSDLTPLTPAHFLIGRSVIFAPHPQVPDSTNIT 588
            T +++      +  I  +R   PL+ D  DLT LT     +  S+  + + +  + + +T
Sbjct: 891  TLDKLIRSPDTLRKIAQNRGTNPLAPDAVDLTQLTSVSEWLA-SIKMSRYAESFERSGVT 949

Query: 589  SLQRFRRI 612
            +L+   R+
Sbjct: 950  TLEAAARV 957


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 311 NENLILESKFLSSKSCDRNRANSL 240
           NEN+  + +F +S S D  R NS+
Sbjct: 95  NENIKSQKEFPNSSSSDDERPNSI 118


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 363 INKISFKAHIRSNKFNF*RNGNMFNTNRSNSKF 461
           I+ +S K    +N + +  N N +N N  N+ +
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNY 347


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 82  CVCVCLATRAVHLELVSDMTKEAFLAALSRFIARRGKP 195
           C   CL      LE+   +  EA  AA  RFI    +P
Sbjct: 666 CETFCLDDDDTLLEVALSLGSEALSAATVRFIEAEPQP 703


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 357 SKINKISFKAHIRSNKFNF*RNGNMFNTNRSNSKFK 464
           SK  KI    +  SN +N+  N N +N N  N+ +K
Sbjct: 76  SKEPKIISNNNSLSNNYNYNNNYNNYN-NNYNTNYK 110


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 390 IRSNKFNF*RNGNMFNTNRSNSK 458
           I +N + +  N N +N N  N K
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKK 111


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 390 IRSNKFNF*RNGNMFNTNRSNSK 458
           I +N + +  N N +N N  N K
Sbjct: 89  IHNNNYKYNYNNNNYNNNNYNKK 111


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +3

Query: 420 NGNMFNTNRSNSKFKTFNSS 479
           N N +N N  N+ +  +N++
Sbjct: 325 NNNNYNNNNYNNNYNNYNNN 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,563
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)