Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1040
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl methyl...    32   0.32 
At4g28620.1 68417.m04092 ABC transporter family protein identica...    31   0.73 
At1g07550.1 68414.m00808 leucine-rich repeat protein kinase, put...    28   6.8  
At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquiti...    27   9.0  
At2g42570.1 68415.m05268 expressed protein                             27   9.0  

>At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292][Mol Plant Pathol (2001)
           2(3):159-169]
          Length = 352

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +1

Query: 163 LSRFIARRGKPRNIFSDNGTTFVGAFNELARFLSQDLELRNFDSSIKFSFIPAYTPHFG 339
           ++ +IA  G+ R I  +NG   + AF ++ +   + L+ +    S+K +F    + HFG
Sbjct: 256 ITLYIAEEGELRQIIEENGKFTIEAFEDIIQPNGESLDPKILAVSLKSAFGGILSAHFG 314


>At4g28620.1 68417.m04092 ABC transporter family protein identical
           to half-molecule ABC transporter ATM2 GI:9964119 from
           [Arabidopsis thaliana]
          Length = 680

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 433 LTQIEAILNSRPLTPLSDDPSDLTPLTPAHFLIGRSVIFAPHPQVPDSTNITSLQR 600
           L +  +IL S P       PS +TP+  A  +   +   APHP+  + T+  ++ R
Sbjct: 35  LIKRNSILESPPTNASHQSPSPITPMVNARVMFFSTSTSAPHPEKINRTSSENILR 90


>At1g07550.1 68414.m00808 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 864

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 25  PIMIADRKVRGCKLVKSFICVCVCLATRAVHLELVSDMTKEA--FLAALSRFIARRGKP 195
           P  + DRK  G KL+     +CV   TR     + + ++  A   L  +  F+ RR KP
Sbjct: 475 PQALLDRKKEGLKLLVDENMICVSCGTRFPTAAVAASVSAVAIIILVLVLIFVLRRRKP 533


>At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquitin
           ligase SCF complex F-box subunit; identical to F-box
           containing protein ORE9 GI:15420162 from [Arabidopsis
           thaliana]
          Length = 693

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 310 FIPAYTPHFGGIWESAVKSTKYHLKRTLGLTNLTFEEMATCLTQIEAILNS 462
           F+P +  H GG  ES   S  YH    L    L + ++A  LT+++ +  S
Sbjct: 149 FVPIFE-HCGGFLESLDLSNFYHWTEDLPPVLLRYADVAARLTRLDLLTAS 198


>At2g42570.1 68415.m05268 expressed protein
          Length = 367

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 352 SAVKSTKYHLKRTLGLTNLTFEEMATCL 435
           S V +T+Y L R  GL +LTFEE    L
Sbjct: 137 SWVPNTRYTLIRQKGLASLTFEEYGVTL 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,027
Number of Sequences: 28952
Number of extensions: 284266
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)