Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1039
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.6  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   2.6  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   3.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   4.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.6  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    22   6.0  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 99  LLLSLDVLYEIMAMKCQIPHETLFRKHLL 13
           ++L L+V+Y + A  C I    +F + LL
Sbjct: 355 IILGLNVVYVVTAWICAITKRDMFVEFLL 383


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 99  LLLSLDVLYEIMAMKCQIPHETLFRKHLL 13
           ++L L+V+Y + A  C I    +F + LL
Sbjct: 80  IILGLNVVYVVTAWICAITKRDMFVEFLL 108


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 188 TNTMYISFSFEGYQMLTLSRKWVDSSSRWN 99
           T + Y+   F   Q + +S+ WV     W+
Sbjct: 118 TMSFYVLNFFGSIQFIIISKHWVTIMKEWS 147


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 195 TRNSLWHLHDGNN 233
           T N+ WH ++GNN
Sbjct: 371 TSNNRWHNNNGNN 383


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +3

Query: 663 LAHRVSKQRDLLILECFTRSPRNTGCIW 746
           L ++ S++ D  +L+C  +  +  G +W
Sbjct: 803 LRNQTSRRGDPAVLQCEAKGEKPIGILW 830


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 180 HVHIFFL*RLPNAYVEPE 127
           H+HI+ L   P+ Y +PE
Sbjct: 105 HLHIYDLHHNPDIYPDPE 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,675
Number of Sequences: 336
Number of extensions: 3963
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)