Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1039
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    27   2.2  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    27   3.8  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   3.8  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   5.0  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   6.6  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   6.6  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.7  

>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
 Frame = +3

Query: 126 FPAQRKHLVAFKGKRYVHGIGSETRN-----SLWHLHDGNNLILVTTCRHGKSWKDLRDE 290
           F  + + L+A  G+ YVH + SE++N         +H G+ ++    C+  K       +
Sbjct: 572 FMGRHERLLAIDGE-YVHIMPSESKNIFETPKTSSIHAGSIIL----CKQSKK-SPCNFK 625

Query: 291 RCEEDNKEYDKFDYEQLLANSTFCIVARGRRL 386
                N+E  ++D+E L A     IV+R R L
Sbjct: 626 MIVSKNRETKRYDFEVLSALEAAIIVSRIRAL 657


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +1

Query: 4   YWPEQVLPK*CFVRDLTFHCHYFIKNIQRKEEFHLLLLSTHFRLNVSI 147
           Y  + V     F R+++    Y+++ IQ    F L+++  H+ + VSI
Sbjct: 78  YGLKNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVMLHWTVGVSI 125


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +3

Query: 150 VAFKGKRYVHGIG----SETRNSLWHLHDGNNLILVTTCRHGKSWKDLRDE-RCEEDNKE 314
           + F+GK+Y+   G    S  R ++ HL  G   I V+      S   L DE     DN  
Sbjct: 470 INFQGKQYMKLSGIIVTSNYRKNVLHLVVGCG-INVSNLGPTVSLNTLVDEWNKNSDNPR 528

Query: 315 YDKFDYEQLLAN 350
            +KF +E+LLA+
Sbjct: 529 LEKFSFEKLLAS 540


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 330 NQTCHILYCPLHIFHLLNLSKIFHDGKWLLRSSYF 226
           +Q C + Y P H  ++ N+ +   D  WL  ++ F
Sbjct: 364 SQECPLFYIPYHDSYIHNVVQCLDDFPWLFLTTAF 398


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 363 IVARGRRLGSYRFLEALAAGCIPVLLSNGWRLPFDEK 473
           +V   ++   +RFL +     I  +  NG+ +PF+EK
Sbjct: 48  VVEEAKQQDFFRFLSSKVLAKIGKVKENGFYMPFEEK 84


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 121 THFRLNVS-IW*PSKEKDMYMVLVVKPV 201
           T F+  +S +W  S E+DM++ L +KP+
Sbjct: 169 TLFQKKLSRVWTTSSERDMFLSLFLKPI 196


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 738 SQCSEGS-W*SIPKLEDLVALKLDEREHVPVK 646
           SQ  EG  W  +P+ ED+ + KLD  +  P++
Sbjct: 370 SQTIEGKIWSCVPQYEDMKSNKLDSEKSEPLQ 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,937
Number of Sequences: 5004
Number of extensions: 66025
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)