Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1039
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.) 286 2e-77
SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07) 58 6e-09
SB_38003| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12) 29 3.0
SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4) 28 7.0
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015) 28 9.3
>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 286 bits (701), Expect = 2e-77
Identities = 127/219 (57%), Positives = 172/219 (78%), Gaps = 2/219 (0%)
Frame = +3
Query: 3 ILARASASEIMFREGFDISLPLFHKEHPEK--GGVPPAATVNPFPAQRKHLVAFKGKRYV 176
IL +AS S + R GFD+SLPLF K HP K G +P + + FP +RK+ +AFKGKRY+
Sbjct: 202 ILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPHSCSA--FPLERKYKLAFKGKRYL 259
Query: 177 HGIGSETRNSLWHLHDGNNLILVTTCRHGKSWKDLRDERCEEDNKEYDKFDYEQLLANST 356
+GIGSE+RN+L+H+H+G +++L+TTC+HGK+W +DERC+ DN YD++ Y++LL N+T
Sbjct: 260 NGIGSESRNALYHIHNGRDIVLLTTCKHGKAWHKHKDERCDGDNALYDRYSYDELLLNAT 319
Query: 357 FCIVARGRRLGSYRFLEALAAGCIPVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPEL 536
FC+V RGRRLGS+RFLE+L GCIP LLS+GW LPF E IDW++AVI ERLL+QVP +
Sbjct: 320 FCLVPRGRRLGSFRFLESLKVGCIPFLLSDGWELPFAEVIDWKKAVIDGSERLLMQVPGI 379
Query: 537 VRSVPPERILALRQQTQFLWEQYFSSIEKIVFTTIEILL 653
VRS ++LA++QQ+ FLW YFSS+EKIV TTIEI++
Sbjct: 380 VRSYSRSQVLAMKQQSLFLWNAYFSSVEKIVHTTIEIII 418
>SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 72.9 bits (171), Expect = 2e-13
Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 6/207 (2%)
Frame = +3
Query: 27 EIMFREGFDISLPLFHKEHPEKGGVPPAATVNPFPAQRKHLVAFKGKRYVHGIGSE--TR 200
++ +R GFD+ +P P G V A P RK+ + F+G ++ G+E ++
Sbjct: 14 DVHYRIGFDVIVPPLIG--PTSGEVWAQAG-QQLPTLRKYFLTFEGSFHLSNEGAEEVSK 70
Query: 201 NSLWHLH-DGNNLILVTTC-RHGKSWKDLRDERCEEDNKEYDKFDYEQLLANSTFCIVAR 374
+ L L + ++L + C + K C + L STF +V
Sbjct: 71 DDLVFLSKESSDLFIAVECVTYDKISNSAGWNLCGSHKNRTVR------LKKSTFSLVPV 124
Query: 375 GRR--LGSYRFLEALAAGCIPVLLSNGWRLPFDEKIDWRRAVIWADERLLLQVPELVRSV 548
G + R +EAL G IPV+L LP E IDWR I ++++ ++R+V
Sbjct: 125 GNSGFVTHVRLIEALQTGAIPVILGTTNMLPLAEFIDWRSVSITLTPARIMELNTILRTV 184
Query: 549 PPERILALRQQTQFLWEQYFSSIEKIV 629
E I LRQQ +F+WE Y S+ E +V
Sbjct: 185 SSEDIHNLRQQGRFIWETYLSTTEAVV 211
>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
Length = 497
Score = 58.4 bits (135), Expect = 6e-09
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 22/106 (20%)
Frame = +3
Query: 420 GCIPVLLSNGWRLPFDEKIDWRR----------------------AVIWADERLLLQVPE 533
GCIP+++S+ + LPF E +DW+R A + E + ++P
Sbjct: 212 GCIPIVVSDDYVLPFSEVLDWKRYDQHDKVPQRYPMLWVARENVRAAVVVSENEIDRIPL 271
Query: 534 LVRSVPPERILALRQQTQFLWEQYFSSIEKIVFTTIEILLERVLAH 671
+++ +I +R Q +F+WE YFSS+ KI TT+ ++ +RV H
Sbjct: 272 ILKDYSQNQIKDMRLQGKFMWENYFSSMGKIALTTLRVINDRVYKH 317
>SB_38003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 378
Score = 31.9 bits (69), Expect = 0.57
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +1
Query: 490 QLFGQTNAYYYRFQSLYVQYHRSASLH*DSKLSFYGSNIFHQLKKSSSQLLRFYWNVFSL 669
Q+F + Y + Y +HR S L+FY +FH++ S+ L F++ VF
Sbjct: 213 QVFHRVTCQSYGSLTFYQVFHRVTCQSIGS-LTFY--QVFHRVTCQSNGSLTFFYQVFHR 269
Query: 670 IEFQSN 687
I QSN
Sbjct: 270 ITCQSN 275
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 532 SLYVQYHRSASLH*DSKLSFYGSNIFHQLKKSSSQLLRFYWNVFSLIEFQSN 687
+ Y +HR S L+FY +FH++ SS L F+++VF + QSN
Sbjct: 279 TFYQVFHRVTCQSIGS-LTFY--QVFHRITCQSSGSLTFFYHVFHRVTCQSN 327
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 490 QLFGQTNAYYYRFQSLYVQYHRSASLH*DSKLSFYGSNIFHQLKKSSSQLLRFYWNVFSL 669
Q+F + + Y +HR S FY +FH++ S+ L F++ VF
Sbjct: 72 QVFHRVTCQSIGSLTFYQVFHRVTCQSIGSLTFFY--QVFHRITCQSNGSLTFFYQVFHR 129
Query: 670 IEFQSN 687
+ QSN
Sbjct: 130 VTCQSN 135
>SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)
Length = 263
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 321 KFDYEQLLANSTFCIVARGRRLGSYRFLEALAAG 422
KF++ QL+ T C+ A G RLGS+ F L G
Sbjct: 132 KFNFRQLV--QTGCVTAWGLRLGSFLFARVLRDG 163
>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1239
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 538 YVQYHRSASLH*DSKLSFYGSNIFHQLKKSSSQLLRFYWNVFSLIEFQSN 687
Y +HR S L+FY +FH++ SS L F++ VF + QSN
Sbjct: 489 YQVFHRVTCQSYGS-LTFY--QVFHRITCQSSGSLTFFYQVFHRVTCQSN 535
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 490 QLFGQTNAYYYRFQSLYVQYHRSASLH*DSKLSFYGSNIFHQLKKSSSQLLRFYWNVFSL 669
Q+F + + Y +HR S FY +FH++ S+ L F++ VF
Sbjct: 615 QVFHRVTCQSIGSLTFYQVFHRITCQSIGSLTFFY--QVFHRITCQSNGSLTFFYQVFHR 672
Query: 670 IEFQSN 687
+ QSN
Sbjct: 673 VTCQSN 678
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 538 YVQYHRSASLH*DSKLSFYGSNIFHQLKKSSSQLLRFYWNVFSLIEFQSN 687
Y +HR S FY +FH++ S+ L F++ VF I QSN
Sbjct: 560 YQVFHRITCQSNGSLTLFY--RVFHRVTCQSNGSLTFFYQVFHRITCQSN 607
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 538 YVQYHRSASLH*DSKLSFYGSNIFHQLKKSSSQLLRFYWNVFSLIEFQSN 687
Y +HR S FY +FH++ S+ L F++ VF I QSN
Sbjct: 524 YQVFHRVTCQSNGSLTFFY--RLFHRVTCQSNGSLTFFYQVFHRITCQSN 571
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 237 SSYFHHVNATKNYGFHYQYHVHI 169
SSY+HH + +++ HY +H H+
Sbjct: 260 SSYYHHHHHRRHHLNHYHHHYHL 282
>SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)
Length = 1145
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 234 LILVTTCRH-GKSWKDLRDERCEEDNKEYDKFDYE 335
L+ + +CR G D DE C++D+ +YD DY+
Sbjct: 39 LLRLASCRVVGDDDDDDDDEGCDDDDDDYDDDDYD 73
>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
Length = 746
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 591 LWE---QYFSSIEKIVFTTIEILLERVLAHRVSKQR 689
LWE Q ++SIE F T+ + LE +HR+S+++
Sbjct: 48 LWEEKDQRYASIEADRFGTVTVCLECKKSHRISRKK 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,960,694
Number of Sequences: 59808
Number of extensions: 459834
Number of successful extensions: 1366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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