Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1039
(750 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 5.3
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 5.3
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 22 7.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.3
AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding prote... 21 9.3
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 237 ILVTTCRHGKSWKDLRDERCE 299
I +TC+ +W D+RCE
Sbjct: 143 IFKSTCKIDITWFPFDDQRCE 163
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 22.2 bits (45), Expect = 5.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 453 SIHYLAKLVYIQLLRLQEICRILIVFLVQQCKKL 352
S+HYL L+YI L + L++++ K L
Sbjct: 46 SLHYLLALLYILFTFLALLGNGLVIWIFCAAKSL 79
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 21.8 bits (44), Expect = 7.1
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -1
Query: 555 PVVLNVQALEPVIISVRLPK*LHASNLFFHQKVISIHYLAKLVYIQLLRLQEI 397
PV L VQA++P+ +V + + + + S H L + LR E+
Sbjct: 189 PVSLVVQAMDPMNTTVYIADDRGDALIIYQNSDDSFHRLTSKTFDNDLRYSEL 241
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 137 LSRKWVDSSSRWNSS 93
L +WVD + +WN S
Sbjct: 39 LKLEWVDYNLQWNES 53
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 137 LSRKWVDSSSRWNSS 93
L +WVD + +WN S
Sbjct: 39 LKLEWVDYNLQWNES 53
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 137 LSRKWVDSSSRWNSS 93
L +WVD + +WN S
Sbjct: 39 LKLEWVDYNLQWNES 53
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 137 LSRKWVDSSSRWNSS 93
L +WVD + +WN S
Sbjct: 39 LKLEWVDYNLQWNES 53
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 137 LSRKWVDSSSRWNSS 93
L +WVD + +WN S
Sbjct: 39 LKLEWVDYNLQWNES 53
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 137 LSRKWVDSSSRWNSS 93
L +WVD + +WN S
Sbjct: 39 LKLEWVDYNLQWNES 53
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 137 LSRKWVDSSSRWNSS 93
L +WVD + +WN S
Sbjct: 107 LKLEWVDYNLQWNES 121
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 137 LSRKWVDSSSRWNSS 93
L +WVD + +WN S
Sbjct: 107 LKLEWVDYNLQWNES 121
>AF393496-1|AAL60421.1| 146|Apis mellifera odorant binding protein
ASP6 protein.
Length = 146
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 250 LAVMENLGKI*EMKDVKRTIKNM 318
LA+ + + K +++ K+TIKN+
Sbjct: 17 LAIEDTMSKKMTIEEAKKTIKNL 39
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,544
Number of Sequences: 438
Number of extensions: 4462
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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