Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1038
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 134 6e-33
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 116 3e-27
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 80 2e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 51 1e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 43 3e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 40 2e-04
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 1.4
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 26 4.2
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 9.7
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 134 bits (325), Expect = 6e-33
Identities = 61/124 (49%), Positives = 79/124 (63%)
Frame = +2
Query: 59 MELSDVIVNQPVXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGP 238
M ++++ NQP+ IDNGSG IKAGFAGD IPKC P +GR H RVM ++ +F G
Sbjct: 1 MTVTEIFDNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGS 60
Query: 239 RAEEHRGLLSIXYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRN 418
A+ RGLL I P G + +W+DME+IW+YI QL+T HP+LLTE PL RN
Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120
Query: 419 TRKV 430
K+
Sbjct: 121 KEKI 124
Score = 47.6 bits (108), Expect = 1e-06
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK AE F+ T VPA S+ VL LYA+ RTTG L+ GDG
Sbjct: 122 EKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDG 163
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 116 bits (278), Expect = 3e-27
Identities = 53/115 (46%), Positives = 71/115 (61%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
IDNGSG+ KAGFAGD P+ P+ +GRP H +M G + G A+ RG+L++ Y
Sbjct: 10 IDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKY 69
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKVRRXI 442
P HG V +W+DMEKIW++ ++L HP LLTEAPLNP N K+ + I
Sbjct: 70 PIEHGIVNNWDDMEKIWHH-TFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQII 123
Score = 50.8 bits (116), Expect = 1e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 117 EKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDG 158
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 80.2 bits (189), Expect = 2e-16
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Frame = +2
Query: 89 PVXIDNGSGVIKAGFAGDQIPKCRXPNYIGRP-XHTRVMAGAL-XGXIFXGPRAEEHRGL 262
P+ +DNG+G +K G+A D P+ + P+ +GRP G + + G AE R L
Sbjct: 5 PIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSL 64
Query: 263 LSIXYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
L + YP +G + D+ +M ++W+Y ++L +LLTE P+NP N K+
Sbjct: 65 LQVKYPMENGIIRDFEEMNQLWDY-TFFEKLKIDPRGRKILLTEPPMNPVANREKM 119
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK E F ++++ AVL LYA G ++G +DSGDG
Sbjct: 117 EKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDG 158
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 50.8 bits (116), Expect = 1e-07
Identities = 36/112 (32%), Positives = 52/112 (46%)
Frame = +2
Query: 92 VXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSI 271
+ ID GS + GF+G+ IPKC P+Y G R + G I+ + + G + I
Sbjct: 14 IVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG--EEYIY-----KSNPG-MEI 65
Query: 272 XYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRK 427
+G V +W+ +W Y QL T HP+L+TE NP N K
Sbjct: 66 KNAIRNGWVENWDVTVDLWRY-GLEQQLKTNPLEHPILITEPFDNPPENRVK 116
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 266 SIXYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRN 418
S+ YP HG + +W+ ME+ W L H LLTE PLNP N
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQ-SLFKYLRCEPEDHYFLLTEPPLNPPEN 138
Score = 32.3 bits (70), Expect = 0.048
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 83 NQPVXIDNGSGVIKAGFAGDQIPKCRXPNYI 175
N P+ +DNG+G K G+AG+ P P I
Sbjct: 5 NVPIIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 39.9 bits (89), Expect = 2e-04
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Frame = +2
Query: 89 PVXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLS 268
P+ IDNGS ++AG+ G++ PK N + R ++ + G G S
Sbjct: 26 PLVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKLSRTS----TLVGNDTLIEVGSRS 81
Query: 269 I-XYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNP 409
I P +++W+ ME++ +Y +L HP+ +TE NP
Sbjct: 82 IARSPFERNVISNWDLMEQVLDYTFL--KLGIDRMEHPICMTEPLANP 127
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = +2
Query: 92 VXIDNGSGVIKAGFAGD---QIPKC 157
+ +DNG+ IKAGFAG +IP C
Sbjct: 8 IVLDNGAYHIKAGFAGGKVVEIPNC 32
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 4.2
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 2/106 (1%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGL--LSI 271
ID GS + G+AG++ P P+Y G V + + + H + + +
Sbjct: 15 IDPGSCWTRFGYAGEESPMTILPSYYG------VRSDVTGRNKYVVDELQIHAPIPGMEV 68
Query: 272 XYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNP 409
+G + DW W ++L + +++TE NP
Sbjct: 69 KNGKSNGIIQDWESTLYTWER-GLKEKLQVNPTEYAMMITEPSWNP 113
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 100 YXDGLIHYNITQLHFNYYFISVP 32
Y + +HY T+ H NYY I++P
Sbjct: 100 YSEEDLHY-FTKHHINYYHIAMP 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,618
Number of Sequences: 5004
Number of extensions: 20558
Number of successful extensions: 48
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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