Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1038
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 1e-27
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 2e-27
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 119 2e-27
SB_56| Best HMM Match : Actin (HMM E-Value=0) 119 2e-27
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 119 2e-27
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 2e-18
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 3e-16
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 63 2e-10
SB_54| Best HMM Match : Actin (HMM E-Value=0) 44 8e-05
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 44 1e-04
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 43 2e-04
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 40 0.001
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 38 0.007
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 32 0.27
SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1) 27 7.6
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 119 bits (287), Expect = 1e-27
Identities = 55/111 (49%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
IDNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 IDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG +DSGDG
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 159
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG +DSGDG
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 159
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 10 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 69
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 70 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 119
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG +DSGDG
Sbjct: 117 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 158
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 10 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 69
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 70 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 119
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG +DSGDG
Sbjct: 117 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 158
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG +DSGDG
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 159
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 89.4 bits (212), Expect = 2e-18
Identities = 39/76 (51%), Positives = 50/76 (65%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
IDNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 10 IDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 69
Query: 278 PXXHGXVTDWNDMEKI 325
P HG VT+W+DMEKI
Sbjct: 70 PIEHGIVTNWDDMEKI 85
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +3
Query: 444 FXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
F T PA ++++ AVL LYA+GRTTG +DSGDG
Sbjct: 87 FETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDG 121
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 81.8 bits (193), Expect = 3e-16
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Frame = +2
Query: 83 NQPVXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPX--HTRVMAGALXGXIFXGPRAEEHR 256
N + DNG+G +K G+AG P P+ +GRP ++ + + G A + R
Sbjct: 6 NSVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLR 65
Query: 257 GLLSIXYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
+L + YP +G V +W+DM+ +W+Y +++ VLLTE PLNP +N K+
Sbjct: 66 YMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKM 123
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK E F ++++ AVL LYA G TG +DSGDG
Sbjct: 121 EKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDG 162
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/42 (71%), Positives = 32/42 (76%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK AE FF T VPA F+SM AVL LYATGRTTG LD+GDG
Sbjct: 143 EKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDG 184
Score = 35.9 bits (79), Expect = 0.022
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +2
Query: 374 HPVLLTEAPLNPXRNTRK 427
HPVLLTEAPLNP RN K
Sbjct: 127 HPVLLTEAPLNPRRNREK 144
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
E+ + F + VP ++++ AV+ LYA+GRTTG D GDG
Sbjct: 2162 ERMVQLMFESFNVPCMYVAVQAVMALYASGRTTGTVFDCGDG 2203
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 92 VXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXH 190
V IDNGSG KAG + D+ P+ P +GRP H
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRH 2129
Score = 34.3 bits (75), Expect = 0.067
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 320 KIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
K+W + DQL PVLLTEAPLNP N ++
Sbjct: 2130 KMWEHAF--DQLRVRGEDFPVLLTEAPLNPKMNRERM 2164
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 83 NQPVXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAG 208
N+ + +DNG G+ K GFAGD++P+ P +G P ++ G
Sbjct: 700 NRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +3
Query: 444 FXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
F PA ++++ AVL LYA+GRTTG DSGDG
Sbjct: 3 FEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDG 37
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 89 PVXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXH 190
P+ ID GS + K GFAGD PK P +GRP H
Sbjct: 1358 PLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRH 1391
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSG 542
EK E F VPA FL +VL +A GR+ G +DSG
Sbjct: 50 EKLTELMFEKYNVPAFFLCKNSVLTAFANGRSNGLVIDSG 89
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLN 406
P G + DW+ EKI +YI + + + S HP+L++EA N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKN-IKSDSALHPLLMSEAAWN 44
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 32.3 bits (70), Expect = 0.27
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+D G+ K GFA +Q P+ PN I + R +F G + EE + ++ Y
Sbjct: 238 LDCGACSQKIGFASNQAPRS-IPNAIFKAKSER-------RKLFIGDQIEECKDYSALFY 289
Query: 278 --PXXHGXVTDWNDMEKIWNY 334
P G + +W+ ++IW+Y
Sbjct: 290 VLPFQKGFLVNWDVEKQIWDY 310
>SB_17653| Best HMM Match : RCSD (HMM E-Value=5.1)
Length = 281
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 445 KNXSAXFSSIPARVQRCFCQQHWVXX*ESR*LVXTVNIIPNLFHVVPVCNXS 290
+N + F + VQ+ C++ + E R L VN++P+ FHV V N S
Sbjct: 30 RNEACTFEKLTDSVQK-MCRKRF----ERRHLAQIVNLMPSAFHVQQVRNSS 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,716,180
Number of Sequences: 59808
Number of extensions: 159972
Number of successful extensions: 239
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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