Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1038
         (550 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.         119   7e-29
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.         119   7e-29
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.         119   7e-29
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.          119   7e-29
CR954256-9|CAJ14150.1|  872|Anopheles gambiae putative calcium/c...    23   6.6  

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  119 bits (286), Expect = 7e-29
 Identities = 54/111 (48%), Positives = 71/111 (63%)
 Frame = +2

Query: 98  IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
           +DNGSG+ KAGFAGD  P+   P+ +GRP H  VM G      + G  A+  RG+L++ Y
Sbjct: 11  VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70

Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
           P  HG VT+W+DMEKIW++    ++L      HPVLLTEAPLNP  N  K+
Sbjct: 71  PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120



 Score = 50.8 bits (116), Expect = 3e-08
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +3

Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
           EK  +  F T   PA ++++ AVL LYA+GRTTG  LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 159


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  119 bits (286), Expect = 7e-29
 Identities = 54/111 (48%), Positives = 71/111 (63%)
 Frame = +2

Query: 98  IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
           +DNGSG+ KAGFAGD  P+   P+ +GRP H  VM G      + G  A+  RG+L++ Y
Sbjct: 11  VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70

Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
           P  HG VT+W+DMEKIW++    ++L      HPVLLTEAPLNP  N  K+
Sbjct: 71  PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120



 Score = 50.8 bits (116), Expect = 3e-08
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +3

Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
           EK  +  F T   PA ++++ AVL LYA+GRTTG  LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 159


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  119 bits (286), Expect = 7e-29
 Identities = 54/111 (48%), Positives = 71/111 (63%)
 Frame = +2

Query: 98  IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
           +DNGSG+ KAGFAGD  P+   P+ +GRP H  VM G      + G  A+  RG+L++ Y
Sbjct: 11  VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70

Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
           P  HG VT+W+DMEKIW++    ++L      HPVLLTEAPLNP  N  K+
Sbjct: 71  PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120



 Score = 50.8 bits (116), Expect = 3e-08
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +3

Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
           EK  +  F T   PA ++++ AVL LYA+GRTTG  LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 159


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score =  119 bits (286), Expect = 7e-29
 Identities = 53/111 (47%), Positives = 71/111 (63%)
 Frame = +2

Query: 98  IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
           +DNGSG+ KAGFAGD  P+   P+ +GRP H  VM G      + G  A+  RG+L++ Y
Sbjct: 11  VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGNKDAYVGDEAQSKRGILTLKY 70

Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
           P  HG +T+W+DMEKIW++    ++L      HPVLLTEAPLNP  N  K+
Sbjct: 71  PIEHGIITNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKSNREKM 120



 Score = 51.2 bits (117), Expect = 2e-08
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +3

Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
           EK  +  F T   PA ++++ AVL LYA+GRTTG  LDSGDG
Sbjct: 118 EKMTQIMFETFAAPAVYVAIQAVLSLYASGRTTGVVLDSGDG 159


>CR954256-9|CAJ14150.1|  872|Anopheles gambiae putative
           calcium/calmodulin-dependentprotein kinase, CAKI
           protein.
          Length = 872

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 65  LSDVIVNQPVXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVM 202
           L D I    V +D       +  A D + K   PN I RP  T V+
Sbjct: 207 LQDAIARGRVTLDTPEWKHISSNAKDLVLKMLAPNPISRPTITEVL 252


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,214
Number of Sequences: 2352
Number of extensions: 5903
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)