Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1038
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 170 5e-43
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 119 2e-27
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 119 2e-27
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 119 2e-27
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 119 2e-27
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 119 2e-27
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 119 2e-27
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 119 2e-27
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 118 2e-27
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 118 2e-27
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 105 2e-23
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 89 2e-18
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 89 2e-18
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 89 2e-18
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 83 1e-16
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 78 5e-15
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 76 2e-14
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 49 3e-06
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 38 0.005
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 30 1.3
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 30 1.3
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 170 bits (414), Expect = 5e-43
Identities = 77/119 (64%), Positives = 88/119 (73%)
Frame = +2
Query: 71 DVIVNQPVXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEE 250
DVI NQPV IDNGSGVIKAGFAG+Q PK R N++GRP + RVMAG L G IF GP+AE
Sbjct: 4 DVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAES 63
Query: 251 HRGLLSIXYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRK 427
+RGL SI YP HG V +W+DMEKIW YI DQL F HPVLLT+APLNP +N +
Sbjct: 64 NRGLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRER 122
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/42 (66%), Positives = 31/42 (73%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
E+ AE FF T VPA ++ M AVL LYATGRTTG LDSGDG
Sbjct: 121 ERSAEIFFETFNVPALYIQMQAVLSLYATGRTTGVVLDSGDG 162
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDG 159
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 50.8 bits (116), Expect = 6e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 159
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDG 159
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDG 159
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDG 159
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDG 159
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 119 bits (286), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDG 159
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 118 bits (285), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 10 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 69
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 70 PIEHGIVTNWDDMEKIWHH-TFYNELRIAPEEHPVLLTEAPLNPKSNREKM 119
Score = 49.6 bits (113), Expect = 1e-06
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LD+GDG
Sbjct: 117 EKMTQIMFETFNTPAMYVNIQAVLSLYASGRTTGIVLDTGDG 158
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 118 bits (285), Expect = 2e-27
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 LDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
P HG VT+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 71 PIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Score = 50.8 bits (116), Expect = 6e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 159
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 105 bits (252), Expect = 2e-23
Identities = 48/103 (46%), Positives = 64/103 (62%)
Frame = +2
Query: 122 KAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXYPXXHGXVT 301
+AGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ YP HG VT
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 302 DWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
+W+DMEKIW++ ++L HPVLLTEAPLNP N K+
Sbjct: 65 NWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLNPKANREKM 106
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 104 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDG 145
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/76 (50%), Positives = 50/76 (65%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKI 325
P HG VT+W+DMEKI
Sbjct: 71 PIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/76 (50%), Positives = 50/76 (65%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKI 325
P HG VT+W+DMEKI
Sbjct: 71 PIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/76 (50%), Positives = 50/76 (65%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDMEKI 325
P HG VT+W+DMEKI
Sbjct: 71 PIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 83.4 bits (197), Expect = 1e-16
Identities = 35/73 (47%), Positives = 47/73 (64%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSIXY 277
+DNGSG+ KAGFAGD P+ P+ +GRP H VM G + G A+ RG+L++ Y
Sbjct: 11 VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 70
Query: 278 PXXHGXVTDWNDM 316
P HG VT+W+DM
Sbjct: 71 PIEHGIVTNWDDM 83
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 77.8 bits (183), Expect = 5e-15
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Frame = +2
Query: 92 VXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPX--HTRVMAGALXGXIFXGPRAEEHRGLL 265
+ +DNG+G +K G+AG P P+ +GRP T+ + + G + R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 266 SIXYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRNTRKV 430
I YP +G V +W+DM +W++ ++L +LLTE PLNP N K+
Sbjct: 69 DINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKM 123
Score = 35.5 bits (78), Expect = 0.025
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F + ++++ AVL LYA G TG +DSGDG
Sbjct: 121 EKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLTGVVVDSGDG 162
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 75.8 bits (178), Expect = 2e-14
Identities = 33/68 (48%), Positives = 45/68 (66%)
Frame = +2
Query: 227 FXGPRAEEHRGLLSIXYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLN 406
+ G A+ RG+L++ YP HG VT+W+DMEKIW++ ++L HPVLLTEAPLN
Sbjct: 10 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHH-TFYNELRVAPEEHPVLLTEAPLN 68
Query: 407 PXRNTRKV 430
P N K+
Sbjct: 69 PKANREKM 76
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSGDG 548
EK + F T PA ++++ AVL LYA+GRTTG LDSGDG
Sbjct: 74 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDG 115
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 48.8 bits (111), Expect = 3e-06
Identities = 39/120 (32%), Positives = 49/120 (40%), Gaps = 13/120 (10%)
Frame = +2
Query: 98 IDNGSGVIKAGFAGDQIPKCRXPNYIG------------RPXHTRVMAGALXGXIFXGPR 241
IDNG+G K G+AG+ P+ P+ I + RV AG F G
Sbjct: 11 IDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGDE 70
Query: 242 AEEHRGL-LSIXYPXXHGXVTDWNDMEKIWNYIXXXDQLSTFSXXHPVLLTEAPLNPXRN 418
A ++ YP HG V DW+ ME+ W L H LLTE PLN N
Sbjct: 71 ALSPAATNYTVKYPIRHGIVEDWDLMERYWEQ-CIFKYLRAEPEDHFFLLTEPPLNTPEN 129
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +3
Query: 423 EKXAEXFFXTXXVPAXFLSMXAVLXLYATGRTTGAELDSG 542
EK E F VPA +LS VL +A GRT G +DSG
Sbjct: 140 EKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGLMVDSG 179
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 101 DNGSGVIKAGFAGDQIPKCRXPNYI 175
D GS + GFAG++ PK P+YI
Sbjct: 17 DAGSQSFRVGFAGEEYPKGDIPSYI 41
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +2
Query: 92 VXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSI 271
+ DNG +K G + P+ PN I + H + +F EE S+
Sbjct: 6 IIFDNGGHNMKIGTIDSESPRL-VPNSIVKAKHEKKR-------VFVAHEQEECSDKFSL 57
Query: 272 XY--PXXHGXVTDWNDMEKIW 328
Y P G V +W+ ++IW
Sbjct: 58 FYVRPIERGYVVNWDTQQQIW 78
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Frame = +2
Query: 92 VXIDNGSGVIKAGFAGDQIPKCRXPNYIGRPXHTRVMAGALXGXIFXGPRAEEHRGLLSI 271
+ DNG +K G + P+ PN I + H + +F EE S+
Sbjct: 6 IIFDNGGHNMKIGTIDSESPRL-VPNSIVKAKHEKKR-------VFVAHEQEECSDKFSL 57
Query: 272 XY--PXXHGXVTDWNDMEKIW 328
Y P G V +W+ ++IW
Sbjct: 58 FYVRPIERGYVVNWDTQQQIW 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,659,206
Number of Sequences: 27780
Number of extensions: 121958
Number of successful extensions: 273
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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