Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1037
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
 Frame = -2

Query: 366 RIVYIYFINRSFNVN---LACS---IVRNVIYW*FI------LLL*YGHNY--LILICAL 229
           RI Y Y ++ +FNV+   L CS    V  + Y  FI      LL  Y   Y  +IL+C  
Sbjct: 55  RIYYFYCVSITFNVHLLFLLCSGYFTVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVY 114

Query: 228 LIYSPFV 208
             Y  F+
Sbjct: 115 YFYYAFI 121



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +3

Query: 564 CNYKYDAFHNYFICLYIIITSCSMSYQVFKIIXCHNFYC 680
           C Y +   H  F C +II T       +  ++  + FYC
Sbjct: 257 CIYYFYYMHLLFCCAFIIFT-----MHLLFLLCIYYFYC 290


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 438 HWKLLSVSHMVLWFIDFLIQKDRKK 512
           H ++L +SH  L+ +DF   ++ KK
Sbjct: 273 HLQVLDLSHNSLYELDFDTFRNTKK 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,775
Number of Sequences: 336
Number of extensions: 3582
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)