Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1037
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 360 VYIYFINRSFNVNLACSIVRNVIYW*FI 277
           +Y++FIN  FNV L   +V N I+W F+
Sbjct: 190 IYVFFINNWFNVKLDNFLVPNAIFWLFL 217


>Z69662-7|CAA93497.2| 1132|Caenorhabditis elegans Hypothetical
           protein F56D5.9 protein.
          Length = 1132

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -2

Query: 402 TLYCNHFRLIPNRIVYIY-FINRSFNVNLACSI-VRNVIYW*FILLL*YGHNYLILICAL 229
           T Y    +     + ++  F++  F +    +I ++N I W FI+L+ +G   L +I  +
Sbjct: 689 TYYHKELKAASESVTFLNKFLDELFEMGRHETIWIQNSIPWYFIVLIIFGSLVLFIILLI 748

Query: 228 LIYSPFVPN 202
           ++YS   PN
Sbjct: 749 ILYS-ITPN 756


>Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical
           protein K10G4.4 protein.
          Length = 727

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 453 STASNDLNAKYISLCQVTLYCNHFRLIPNRIVYIYFINRSF 331
           S  S + N   ++L   TL+C H + + +RI Y  F + SF
Sbjct: 319 SVDSENRNEFSVNLDYRTLFCTHLKYLLDRIGYCTFASFSF 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,744
Number of Sequences: 27780
Number of extensions: 325187
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)