Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1037
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/36 (19%), Positives = 19/36 (52%)
 Frame = +3

Query: 447 LLSVSHMVLWFIDFLIQKDRKKNYNYLTSCLLIDYP 554
           + ++  ++ W     ++ D +  ++YL +C   D+P
Sbjct: 6   ITALGFLLFWQNSASLENDNEFGFSYLLNCKNYDHP 41


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 295 YIPDNAAGQIDIKGSIDEVNINNPIGNQSEVIAIQGYLT 411
           ++PD  AG  +I G   +       G     IA+ GY T
Sbjct: 235 FMPDPLAGDYNIGGLNFQWGEEGIFGMSLSPIAVNGYRT 273


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 340 IDEVNI-NNPIGNQSEVIAIQGYLTEADIL 426
           +D  N+   P+GN+SE + +   LT   I+
Sbjct: 32  LDTYNVLERPVGNESEPLVLSFGLTLMQII 61


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 88   SIGVRVEAGAPLWF*EQKNAAQHTELLVLIICSELINL 201
            ++GV V     +   +Q+ + Q T+   +I+ S+L+N+
Sbjct: 1213 NVGVGVSNSGSVVLGKQQPSQQQTQQQPIILPSQLLNI 1250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,676
Number of Sequences: 438
Number of extensions: 4324
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)