Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1035
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   143   2e-35
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    27   1.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  143 bits (346), Expect = 2e-35
 Identities = 70/132 (53%), Positives = 84/132 (63%)
 Frame = +2

Query: 5   TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 184
           TVYPPLSS  +H G ++DLAI SL L GISS                   S  Q+PLF  
Sbjct: 134 TVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAW 193

Query: 185 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 364
           A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYIL
Sbjct: 194 AIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYIL 253

Query: 365 ILPGFGIISHII 400
           I+P FG++SHII
Sbjct: 254 IMPAFGVVSHII 265



 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 28/46 (60%), Positives = 41/46 (89%)
 Frame = +3

Query: 483 IV*AHHIFTVGIDIETRAYFTSATIIIAVPTGIKIFR*LATIHGNS 620
           +V +HH+FTVG+D++TRAYF++AT++IA+PTGIKIF  LAT+ G +
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGA 337


>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 344 HPEVYILILPGFGIISHIISQERGKKETCWLFRNNLCYTSNWVIRIHCLSS 496
           H E Y+++ P  GII   + +ER + ET +  ++ +CY   W  +   +S+
Sbjct: 110 HWETYLVMDPTSGII---MMEERTRSETSYANQDRMCY---WGYKFEAIST 154


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 422  ETCWLFRNNLCYTSNWVIRIHCLSSSYIH 508
            E  WLF NN+  ++ W  ++    S+++H
Sbjct: 3956 EPLWLFINNIHLSTPWAEKLPSKMSNHLH 3984


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,400
Number of Sequences: 5004
Number of extensions: 34905
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)