Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1035
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   53   2e-07
SB_43106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/35 (62%), Positives = 32/35 (91%)
 Frame = +3

Query: 516 IDIETRAYFTSATIIIAVPTGIKIFR*LATIHGNS 620
           ++++TRAYFT+AT+IIAVPTGIK+F  LAT++G +
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGA 35


>SB_43106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 495 HHIFTVGIDIETRAYFTSATIIIAVPTGIKIFR*LATIHGNSN*XITL 638
           HHI+++   +E R + +    I ++PT I+  R +  ++   N  I L
Sbjct: 265 HHIYSIPTAVEGRLFSSDGHHIYSIPTAIQFRRPMQPVNVKQNLPILL 312


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,130,776
Number of Sequences: 59808
Number of extensions: 235912
Number of successful extensions: 466
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)