Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1034
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.54 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    24   1.2  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    23   2.9  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   8.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 325 YALYFFLCMQIFFLQVSLFIFNVLFLYF*EL*HSLEFLVLCV*IFRFEFI 176
           YA    LC+  F+    +F  ++LFL          F +LC+  F   FI
Sbjct: 105 YAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFI 154



 Score = 24.6 bits (51), Expect = 0.71
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 319 LYFFLCMQIFFLQVSLFIFNVLFL 248
           L+F LC+  F+    +F  ++LFL
Sbjct: 140 LFFLLCIYYFYCAFIIFTVHLLFL 163



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -2

Query: 328 LYALYFFLCMQIFFLQVSLFIFNVLFLYF*EL*HSLEFLVLCV*IF 191
           L  +Y+F C  I F    LF+  +   +   +  ++  L  C  IF
Sbjct: 143 LLCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIFTMHLLFCCAFIF 188


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 554 KPDVQYSDIGGMDTQKQEIRGSC*TPS-HSC 643
           +P  QYS +   D++  E+  +  TP   SC
Sbjct: 38  EPSCQYSPVSNSDSENSEVSSNSYTPKIKSC 68


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 322 HTVCSSCHWTVS*GS*SKYRHSWQH 396
           HT CS C  T   GS    RH   H
Sbjct: 72  HTECSKCSETQKNGSKKIMRHLIDH 96


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 277 SLFIFNVLFLYF 242
           SLFIF+++FL F
Sbjct: 144 SLFIFDLIFLSF 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,147
Number of Sequences: 336
Number of extensions: 2519
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)