Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1034
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 237 6e-63
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 100 1e-21
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 100 1e-21
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 71 9e-13
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 70 2e-12
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 62 2e-10
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 62 3e-10
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 59 2e-09
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 59 3e-09
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 46 2e-05
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 45 4e-05
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ... 36 0.031
At5g55490.1 68418.m06911 expressed protein 35 0.054
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 32 0.38
At1g03080.1 68414.m00282 kinase interacting family protein simil... 31 0.50
At5g32169.1 68418.m03692 hypothetical protein 30 1.5
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 30 1.5
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 30 1.5
At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /... 29 2.7
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 29 2.7
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 29 3.5
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 28 4.7
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 28 4.7
At3g19370.1 68416.m02457 expressed protein 28 4.7
At5g40540.1 68418.m04920 protein kinase, putative similar to pro... 28 6.2
At3g62670.1 68416.m07040 two-component responsive regulator fami... 28 6.2
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 28 6.2
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 28 6.2
At1g77890.1 68414.m09078 expressed protein 28 6.2
At1g69910.1 68414.m08045 protein kinase family protein contains ... 28 6.2
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 28 6.2
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 27 8.2
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule... 27 8.2
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 27 8.2
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 237 bits (579), Expect = 6e-63
Identities = 113/143 (79%), Positives = 125/143 (87%)
Frame = +2
Query: 185 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFXEA 364
+ EDLY + K L+R LEF ++QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF E
Sbjct: 26 DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85
Query: 365 VDQNTGIVGSTTGSNYYVRXLSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 544
VDQN GIVGSTTGSNYYVR LSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L
Sbjct: 86 VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 145
Query: 545 ADEKPDVQYSDIGGMDTQKQEIR 613
EKPDV Y+DIGG D QKQEIR
Sbjct: 146 QSEKPDVSYNDIGGCDIQKQEIR 168
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 100 bits (239), Expect = 1e-21
Identities = 52/158 (32%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Frame = +2
Query: 161 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 319
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 320 RIQSVPLVIGQFXEAVDQNTGIVGSTTGSNYYVRXLSTIDRELLKPSASVALHKHSNALV 499
++ P+ +G E +D+N IV S+ G YYV LS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 500 DVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIR 613
+L E D +S+++ ++ P Y+DIGG++ Q QEI+
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIK 201
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 100 bits (239), Expect = 1e-21
Identities = 52/158 (32%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Frame = +2
Query: 161 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 319
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 320 RIQSVPLVIGQFXEAVDQNTGIVGSTTGSNYYVRXLSTIDRELLKPSASVALHKHSNALV 499
++ P+ +G E +D+N IV S+ G YYV LS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 500 DVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIR 613
+L E D +S+++ ++ P Y+DIGG++ Q QEI+
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIK 201
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 70.5 bits (165), Expect = 9e-13
Identities = 39/143 (27%), Positives = 73/143 (51%)
Frame = +2
Query: 203 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFXEAVDQNTG 382
++Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ +D
Sbjct: 16 SEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 383 IVGSTTGSNYYVRXLSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPD 562
IV +++G Y V S +D+E L V L + ++ LP E D + + ++ +
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN 135
Query: 563 VQYSDIGGMDTQKQEIRGSC*TP 631
+ YS +GG+ Q +E+R S P
Sbjct: 136 ISYSAVGGLGDQIRELRESIELP 158
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 69.7 bits (163), Expect = 2e-12
Identities = 40/143 (27%), Positives = 72/143 (50%)
Frame = +2
Query: 203 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFXEAVDQNTG 382
T Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ +D
Sbjct: 16 TDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 383 IVGSTTGSNYYVRXLSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPD 562
IV +++G Y V S +D+E L V L + ++ LP E D + + ++ +
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN 135
Query: 563 VQYSDIGGMDTQKQEIRGSC*TP 631
+ YS +GG+ Q +E+R S P
Sbjct: 136 ISYSAVGGLGDQIRELRESIELP 158
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 62.5 bits (145), Expect = 2e-10
Identities = 41/174 (23%), Positives = 84/174 (48%), Gaps = 21/174 (12%)
Frame = +2
Query: 152 AFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 331
+F G Q + ++D+ + L + L+ + + + ++K++ QE++K +
Sbjct: 10 SFEGDQ-LASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQ 68
Query: 332 VPLVIGQFXEAVD------------------QNTG---IVGSTTGSNYYVRXLSTIDREL 448
+P ++G E ++ Q G ++ ++T ++ + +D +
Sbjct: 69 LPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDT 128
Query: 449 LKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEI 610
LKP V ++K S ++D LP E DS + ++ DEKP Y+DIGG++ Q QE+
Sbjct: 129 LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQEL 182
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 62.1 bits (144), Expect = 3e-10
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 21/164 (12%)
Frame = +2
Query: 182 LESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFXE 361
+ +ED+ + L + L+ + E + K++ QE++K + +P ++G E
Sbjct: 20 MSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVE 79
Query: 362 AVDQNTG---------------------IVGSTTGSNYYVRXLSTIDRELLKPSASVALH 478
++ N ++ ++T ++ + +D + LKP V ++
Sbjct: 80 ILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVN 139
Query: 479 KHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEI 610
K S ++D LP E DS + ++ DEKP Y+DIGG++ Q QE+
Sbjct: 140 KDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQEL 183
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 59.3 bits (137), Expect = 2e-09
Identities = 36/133 (27%), Positives = 64/133 (48%)
Frame = +2
Query: 215 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFXEAVDQNTGIVGS 394
+LQR+ ++ ++ L +EE++ +Q +G+ + + +N +V
Sbjct: 42 ELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 395 TTGSNYYVRXLSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYS 574
Y V +ID L PS VAL S L VLP + D +++++ ++ PD Y
Sbjct: 102 HPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYD 161
Query: 575 DIGGMDTQKQEIR 613
IGG+D Q +EI+
Sbjct: 162 MIGGLDQQIKEIK 174
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 58.8 bits (136), Expect = 3e-09
Identities = 36/133 (27%), Positives = 64/133 (48%)
Frame = +2
Query: 215 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFXEAVDQNTGIVGS 394
+LQR L ++ ++ L +EE++ +Q +G+ + + +N +V
Sbjct: 42 ELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 395 TTGSNYYVRXLSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYS 574
Y V +ID + PS VAL S L VLP + D +++++ ++ PD Y
Sbjct: 102 HPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYD 161
Query: 575 DIGGMDTQKQEIR 613
IGG+D Q +EI+
Sbjct: 162 MIGGLDQQIKEIK 174
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 506 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIR 613
LPP+ D S++M+ +EKPD YSDIGG Q ++IR
Sbjct: 183 LPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIR 218
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +2
Query: 506 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIR 613
LPP+ D S++M+ +EKPDV Y+D+GG Q +++R
Sbjct: 146 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMR 181
>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
similar to leucine zipper-EF-hand containing
transmembrane protein 1 [Homo sapiens] GI:4235226;
contains Pfam profile PF00036: EF hand
Length = 736
Score = 35.5 bits (78), Expect = 0.031
Identities = 33/121 (27%), Positives = 56/121 (46%)
Frame = +2
Query: 182 LESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFXE 361
L SED ++ K R LE+LE+QEE IK+E+ ++E +E + V L
Sbjct: 485 LSSEDSVSERK---RKLEYLEMQEELIKEEEEEEEEEMAKMKESASSQKDVALDEMMAST 541
Query: 362 AVDQNTGIVGSTTGSNYYVRXLSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISML 541
A D N T + + LS +L ++SV++ + + ++ E D SM+
Sbjct: 542 AKDANEQAKAKTLEKHEQLCELSRA-LAVLASASSVSMEREE--FLKLVKKEVDLYNSMV 598
Query: 542 Q 544
+
Sbjct: 599 E 599
>At5g55490.1 68418.m06911 expressed protein
Length = 537
Score = 34.7 bits (76), Expect = 0.054
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = +2
Query: 62 TKSLSYRNNGRDWNYFTRXKMTKSQX---SKGLAFAGPQSFDELESEDLYTKYKKLQRML 232
TK + ++ D TR + K Q + +A G Q +SE L LQR+
Sbjct: 248 TKMIDLQSTTDDIGTKTRSSLDKQQKLLDGQTVALDGIQFLTRFQSEALQESRNTLQRLK 307
Query: 233 EFLEVQEEYIKDEQRNLKKEYLHAQEEVK 319
EF + Q+E + Q L++ + H E K
Sbjct: 308 EFSQEQQEDLAKRQEKLQEVHDHLFENSK 336
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/70 (22%), Positives = 37/70 (52%)
Frame = +2
Query: 119 KMTKSQXSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYL 298
K K + L G +++ ++ K L++ +++ E++++ IKD+ L++E
Sbjct: 700 KKNKEDFEQQLENIGSIREMQMKESEISGKISGLEKKIQYAEIEKKSIKDKLPQLEQEER 759
Query: 299 HAQEEVKRIQ 328
+ EE+ RI+
Sbjct: 760 NIIEEIDRIK 769
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +2
Query: 179 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 325
E E E L K KL E E+Q + D +LK + HAQEE +R+
Sbjct: 380 EGEVESLKQKVSKLIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRL 428
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -2
Query: 307 LCMQIFFLQVSLFIFNVLFLY 245
LC ++F +++SL++F++ FLY
Sbjct: 204 LCSRLFVIRISLYLFSIQFLY 224
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +2
Query: 179 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFX 358
E E + L + KL + E L V+ + + L++E HAQ+ KR+ S L
Sbjct: 292 ETEIKALKQELLKLNEVNEDLNVRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKI 351
Query: 359 EAVDQNTGIVGS 394
+ V++ ++ S
Sbjct: 352 KTVEEQCALLES 363
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 221 QRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV 334
+R LE+LE+QEE IK+E+ +KE +EE+ RI+ V
Sbjct: 516 RRKLEYLEMQEELIKEEE---EKE----EEELTRIKDV 546
>At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus], SEC14 cytosolic factor
(Phosphatidylinositol/phosphatidylcholine transfer
protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
and to SEC14 cytosolic factor (SP:P53989) [Candida
glabrata]
Length = 376
Score = 29.1 bits (62), Expect = 2.7
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Frame = +2
Query: 155 FAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV 334
F + FD +S++ + Y K + + + +++ +E +KK Y H +V +
Sbjct: 54 FLKMRDFDLEKSKEAFLNYMKWRVDYKVDLISQKFKFEEYGEVKKHYPHGFHKVDK-TGR 112
Query: 335 PLVIGQFXEAVDQNTGIVGSTTGS--NYYVRXLSTIDRELLKPSASVALHKHSNALVDVL 508
P+ I + D N + +T NY+++ L P+ S+A KH ++ +L
Sbjct: 113 PIYIERLG-MTDLNAFLKATTIERYVNYHIKEQEK-TMSLRYPACSIASDKHVSSTTTIL 170
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 392 STTGSNYYVRXLSTIDRELLKPSASVALHKHSNALVDVLPP 514
+TT ++Y+R L+ + ++ KP+ S + +N +D+ PP
Sbjct: 25 NTTNRDHYLRQLNKLSHKISKPTNSSSSVSVANREIDLPPP 65
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 431 TIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEI 610
+ID E+L A H H+ AL + P ++ E P+V ++DIGG++ K+E+
Sbjct: 439 SIDAEILNSMAVTNEHFHT-ALGNSNPSALRETVV-----EVPNVSWNDIGGLENVKREL 492
Query: 611 R 613
+
Sbjct: 493 Q 493
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +2
Query: 179 ELESEDLYTKYKKLQRMLEFLEVQEE----YIKDEQRNLKKE 292
E E E + K ++L++ E++ Q E Y+KDE+ N+K+E
Sbjct: 559 EAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEE 600
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/51 (25%), Positives = 33/51 (64%)
Frame = +2
Query: 176 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 328
D LE ++ ++ +K+ + LE+ +EY++D +R +++ +EE+K+++
Sbjct: 581 DRLEVDERCSRLEKIDQ----LEIFQEYLRDLEREEEEKKKIQKEELKKVE 627
>At3g19370.1 68416.m02457 expressed protein
Length = 704
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +2
Query: 122 MTKSQXSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLH 301
MTK + + L +++ES++ KKL+ +E + E +K + N KE +
Sbjct: 458 MTKDEIKRHLGLTKSDKVEKIESDEKQELRKKLEESVEKIRNLEAEMKTLREN--KEKVE 515
Query: 302 AQEEVKR 322
A+ E ++
Sbjct: 516 AEMETEK 522
>At5g40540.1 68418.m04920 protein kinase, putative similar to
protein kinase ATN1 [Arabidopsis thaliana]
gi|1054633|emb|CAA63387
Length = 353
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 416 VRXLSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDT 595
+R LSTI L P A + N VLPPE+ + S++ +K + ++
Sbjct: 287 LRCLSTISSTELVPPAIKRVFSSENT---VLPPESPGTCSLMTVRDKDQIPTD----ANS 339
Query: 596 QKQEIRGS 619
+ E+RGS
Sbjct: 340 AQNEVRGS 347
>At3g62670.1 68416.m07040 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 426
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 98 WNYFTRXKMTKSQXSK----GLAFAGPQSFDELESEDLY 202
W + R +M+KS K G + P +D+LE ++LY
Sbjct: 151 WRHVYRKRMSKSGLDKPGESGTVESDPDEYDDLEQDNLY 189
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 236 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 346
FLEV Y++++++ L+KE + + V+ P+VI
Sbjct: 106 FLEVDSPYVREQKKLLRKEVVAWSKGVRGNAEKPIVI 142
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 27.9 bits (59), Expect = 6.2
Identities = 8/21 (38%), Positives = 18/21 (85%)
Frame = +2
Query: 551 EKPDVQYSDIGGMDTQKQEIR 613
EKP++++SD+ G+++ KQ ++
Sbjct: 125 EKPNIKWSDVAGLESAKQALQ 145
>At1g77890.1 68414.m09078 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 179 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 295
EL++E L +KLQ +E L+ + + RNLK+ Y
Sbjct: 66 ELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERY 104
>At1g69910.1 68414.m08045 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 366 TASXNCPMTRGTDCMRFTSSCACKYSFFKFRCSSLMYSSCTSKNSNILWSFLYF 205
++S +CP + F++S C + F+ +CSS S T N+ +S L++
Sbjct: 31 SSSFHCPPFNSSPPYPFSASPGCGHPNFQIQCSS---SRATITIKNLTFSILHY 81
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 176 DELESEDLYTKYKKLQRMLEFL-EVQEEYIKDEQRNLKKEYLHAQEEVK 319
+ +++ +K + L + LE + E QE+ K +QRNL+K + ++K
Sbjct: 67 ERIQNPSASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLK 115
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 431 TIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEI 610
+ID E+L A H H+ AL + P ++ E P+V + DIGG++ K+E+
Sbjct: 439 SIDAEILNSMAVSNEHFHT-ALGNSNPSALRETVV-----EVPNVSWEDIGGLENVKREL 492
Query: 611 R 613
+
Sbjct: 493 Q 493
>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
ovule-specific homeobox protein A20 nearly identical to
meristem L1 layer homeobox protein A20 (AtML1)
[Arabidopsis thaliana] GI:1881536, protodermal factor2
(PDF2) [Arabidopsis thaliana] GI:14276060
Length = 762
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = +2
Query: 326 QSVPLVIGQFXEAVDQNTGIVGSTTGSNYYVRXL---STIDRELLKPSASVALHK--HSN 490
+S+ L +G F + +TG VG GS+ +R + S D+ ++ A A+ +
Sbjct: 216 RSLDLEVGNFGNNNNSHTGFVGEMFGSSDILRSVSIPSEADKPMIVELAVAAMEELVRMA 275
Query: 491 ALVDVLPPEADSSISMLQADE 553
D L +D+S+ +L +E
Sbjct: 276 QTGDPLWVSSDNSVEILNEEE 296
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 185 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVK 319
E ED K ++ ++ E + +EE K E+ N KKE +EEVK
Sbjct: 189 EEEDKKKKEEEDKKKKEDEKKKEEEKKKEEENKKKEGEKKKEEVK 233
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,904,965
Number of Sequences: 28952
Number of extensions: 209733
Number of successful extensions: 750
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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