Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1033
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391...    28   6.2  
04_01_0187 - 2153546-2154520,2154581-2155858                           28   6.2  

>04_01_0293 +
           3881375-3883698,3906619-3907636,3907820-3908309,
           3914729-3914823,3914854-3915213
          Length = 1428

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 364 IIYLDDLLYYARR*EPTARHLKTCYRRLR 450
           ++++DD+L Y+R  E    HL+    +LR
Sbjct: 683 VVFIDDILIYSRTKEEHEEHLRLALEKLR 711


>04_01_0187 - 2153546-2154520,2154581-2155858
          Length = 750

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 364 IIYLDDLLYYARR*EPTARHLKTCYRRLR 450
           ++++DD+L Y+R  E    HL+    +LR
Sbjct: 29  VVFIDDILIYSRTKEEHEEHLRLALEKLR 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,452,581
Number of Sequences: 37544
Number of extensions: 219581
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)