Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1033
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)            31   0.68 
SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)                    29   4.8  
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_33043| Best HMM Match : Ank (HMM E-Value=2.3e-07)                   28   6.3  
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 28   8.4  

>SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)
          Length = 427

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 405 RAHSTSSKNLLPSIENYIRNTRSTSSLMLR 494
           R  S+S K  LP+++N ++N+R+TS ++ R
Sbjct: 85  RQRSSSGKMQLPNLDNIVKNSRTTSRIVTR 114


>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
          Length = 1164

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 433 KFLDDVLWALISERNTKGHLNK*FPIFFLLDIKCLFVYISTINYECRYKIN 281
           K   D+   L S R T  H+ + F    +  I   F ++ T  +ECRY+ N
Sbjct: 415 KAAKDIARVLFSTRLTMFHIIRLFKASLVFAILVTFGFLFTDIFECRYRKN 465


>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 364 IIYLDDLLYYARR*EPTARHLKTCYRRLR 450
           +IY+DDL+ +++  E    HL   + RLR
Sbjct: 375 LIYIDDLIIFSKSEEEHLEHLAEIFERLR 403


>SB_33043| Best HMM Match : Ank (HMM E-Value=2.3e-07)
          Length = 263

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 393 RSEMRAHSTSSKNLLPSIENYIRNTRSTSSLMLRILFTFFRVRTENPK 536
           RS+      SSK +   I   +R+T  +SS +LR + T   +RTE+ K
Sbjct: 6   RSQCSLRQPSSKVIDRRISKRVRSTAESSSCILRWISTASFLRTEHRK 53


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 346 LDIKCLFVYISTINYECRYKINYQILIQCFGDLK 245
           L +  + VY++ INY CR K   Q+   C   L+
Sbjct: 12  LCVSNVIVYLANINYYCREKYYRQLQTTCLESLR 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,582,340
Number of Sequences: 59808
Number of extensions: 299595
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)