Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1033
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-2|AAC77512.1|  242|Caenorhabditis elegans Set (trithorax/...    30   1.8  
U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U00043-2|AAC77512.1|  242|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 1, isoform
           a protein.
          Length = 242

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +3

Query: 396 SEMRAHSTSSKNLLPSIENYIRNTRSTSSLMLRILFTFFRVRTENPKSKIQSRAMVKRCL 575
           S + +HS+SS  + PS     R   S   +    +  FF+VR  N K+  Q     K  L
Sbjct: 34  SSLASHSSSSGRMTPSKNTRSRKGVSVKDVSNHKITEFFQVRRSNRKTSKQISDEAKHAL 93

Query: 576 K 578
           +
Sbjct: 94  R 94


>U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical
           protein F46C8.7 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 438 PSIENYIRNTRSTSSLMLRILFTFFRVRTENPKSKIQS 551
           P++++YI +TR +      I FT+ R++T N   ++++
Sbjct: 50  PALKHYIYDTRLSKIQKRAIRFTWHRLQTRNGGKRVEN 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,913,210
Number of Sequences: 27780
Number of extensions: 234855
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)