Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1030
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 367 e-103
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 153 2e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 153 2e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 3e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 3e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 7e-20
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 2e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 5e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 2e-04
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 30 0.22
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.1
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 8.5
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 25 8.5
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 25 8.5
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 367 bits (903), Expect = e-103
Identities = 179/191 (93%), Positives = 187/191 (97%)
Frame = +1
Query: 1 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVK 180
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 103
Query: 181 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK 360
+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 104 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK 163
Query: 361 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTLHLVX 540
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSDYNIQKESTLHLV
Sbjct: 164 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 223
Query: 541 RLXGGMXIFLE 573
RL GGM IF++
Sbjct: 224 RLRGGMQIFVK 234
Score = 367 bits (903), Expect = e-103
Identities = 179/191 (93%), Positives = 187/191 (97%)
Frame = +1
Query: 1 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVK 180
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 181 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK 360
+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 180 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK 239
Query: 361 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTLHLVX 540
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSDYNIQKESTLHLV
Sbjct: 240 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 299
Query: 541 RLXGGMXIFLE 573
RL GGM IF++
Sbjct: 300 RLRGGMQIFVK 310
Score = 361 bits (889), Expect = e-101
Identities = 176/186 (94%), Positives = 183/186 (98%)
Frame = +1
Query: 1 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVK 180
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK
Sbjct: 196 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 181 AKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK 360
+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK
Sbjct: 256 SKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK 315
Query: 361 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTLHLVX 540
TITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSDYNIQKESTLHLV
Sbjct: 316 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 375
Query: 541 RLXGGM 558
RL GG+
Sbjct: 376 RLRGGL 381
Score = 300 bits (737), Expect = 8e-83
Identities = 146/158 (92%), Positives = 154/158 (97%)
Frame = +1
Query: 100 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 279
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 280 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 459
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 460 FAGKQLXDGRTLSDYNIQKESTLHLVXRLXGGMXIFLE 573
FAGKQL DGRTLSDYNIQKESTLHLV RL GGM IF++
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVK 158
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 2e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +1
Query: 100 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 279
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 280 IQKESTLHLVLRLRGG-MQIFVKTLTGK 360
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 146 bits (353), Expect = 3e-36
Identities = 70/77 (90%), Positives = 74/77 (96%)
Frame = +1
Query: 328 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 507
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 508 IQKESTLHLVXRLXGGM 558
IQKESTLHLV RL GG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 71.7 bits (168), Expect = 7e-14
Identities = 36/45 (80%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG-MQIFVKTLTGK 132
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG ++ +K L K
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 153 bits (371), Expect = 2e-38
Identities = 76/88 (86%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +1
Query: 100 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 279
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 280 IQKESTLHLVLRLRGG-MQIFVKTLTGK 360
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 146 bits (353), Expect = 3e-36
Identities = 70/77 (90%), Positives = 74/77 (96%)
Frame = +1
Query: 328 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 507
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 508 IQKESTLHLVXRLXGGM 558
IQKESTLHLV RL GG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 71.7 bits (168), Expect = 7e-14
Identities = 36/45 (80%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG-MQIFVKTLTGK 132
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG ++ +K L K
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 3e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 100 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 279
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 280 IQKESTLHLVLRLRGG 327
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 146 bits (353), Expect = 3e-36
Identities = 72/85 (84%), Positives = 76/85 (89%)
Frame = +1
Query: 328 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 507
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 508 IQKESTLHLVXRLXGGMXIFLENTY 582
IQKESTLHLV RL GG + TY
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTY 85
Score = 70.9 bits (166), Expect = 1e-13
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +1
Query: 1 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 99
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 3e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = +1
Query: 100 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 279
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 280 IQKESTLHLVLRLRGG 327
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 146 bits (353), Expect = 3e-36
Identities = 72/85 (84%), Positives = 76/85 (89%)
Frame = +1
Query: 328 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 507
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 508 IQKESTLHLVXRLXGGMXIFLENTY 582
IQKESTLHLV RL GG + TY
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTY 85
Score = 70.9 bits (166), Expect = 1e-13
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +1
Query: 1 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 99
IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 44 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.9 bits (218), Expect = 7e-20
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = +1
Query: 100 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 279
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 280 IQKESTLHLVLRLRGG 327
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 87.4 bits (207), Expect = 1e-18
Identities = 38/76 (50%), Positives = 54/76 (71%)
Frame = +1
Query: 328 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 507
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 508 IQKESTLHLVXRLXGG 555
++ S LHLV L GG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 1 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 99
I+AGKQ+ D + Y+++ S LHLVL LRGG
Sbjct: 44 IYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +1
Query: 130 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 291
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +1
Query: 358 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKE 519
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 5e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +1
Query: 100 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 279
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 280 IQKESTLHLVLRL 318
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 41.9 bits (94), Expect = 7e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 328 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYN 507
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 508 IQKESTLHLVXRL 546
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 29.1 bits (62), Expect = 0.52
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 1 IFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90
I+AG+ L+D +L Y IQ ++HLV L
Sbjct: 47 IYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +1
Query: 127 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 300
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 355 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSDYNIQKESTL 528
GK LE+E ++T +K ++ +PP++Q++I G QL D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 30.3 bits (65), Expect = 0.22
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 186 LGFHIFDGVRCFNFQCDGFTGKCFHKNLHSTS 91
L FDG + +N CD F GKCFHK +TS
Sbjct: 15 LSIGTFDGYKIYN--CDPF-GKCFHKIQGATS 43
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 414 LGFHILNGVRCFNF*CDGFTGKCFHKDLHATT 319
L +G + +N CD F GKCFHK AT+
Sbjct: 15 LSIGTFDGYKIYN--CDPF-GKCFHKIQGATS 43
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.6
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = -2
Query: 434 IPSLS*ILAFTFSMVSDASTSSVMVL-PVSVFTKICMPPRSLKTKCRVDSFWML*SDNVR 258
+PS + + T S + +ST S +L P SV + I P S + + S + SD
Sbjct: 114 LPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAIL--PSSTSVEVSISSSSLSSSD--- 168
Query: 257 PSSSCLPAKINRC*SGGIPSLS*ILAFTFSMVSDASTSNVMVLPVSVFTKICIP 96
P +S + ++ S PS+S + TFS + STS+ + SV + P
Sbjct: 169 PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSP 222
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 103 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 276
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 277 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 366
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 331 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLXDGRTLSD--Y 504
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 505 NIQKESTLHLV 537
+ T HLV
Sbjct: 65 DATDLVTFHLV 75
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 416 ILAFTFSMVSDASTSSVMVLPVSVFT 339
ILAF F +T +V VLPVS F+
Sbjct: 182 ILAFGFVNSFSGATDTVRVLPVSQFS 207
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 8.5
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)
Frame = +1
Query: 115 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA------GKQLE-------D 255
K TGKT + + + ++ K+KIQ +P + L + GK +
Sbjct: 89 KNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTG 148
Query: 256 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGI 435
G TL D I+ T+H+V+ G V L GK + E + + + K+ E
Sbjct: 149 GTTLRDDIIRLNDTVHIVVGTPGR----VLDLAGKGVADFSECTTFVMDEADKLLSPEFT 204
Query: 436 PPDQQRLIFAGK 471
P +Q L + K
Sbjct: 205 PIIEQLLSYFPK 216
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 71 CIWCYVSEVECRFL*KHLPVKPSHWKLKHLTP 166
C WC S EC L P+ SH + H+ P
Sbjct: 622 CRWCLDSGKECGELLLGTPLLHSHLQEMHIFP 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.137 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,960
Number of Sequences: 5004
Number of extensions: 51275
Number of successful extensions: 196
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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