Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1030
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.19 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 157 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 267
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 24.6 bits (51), Expect = 0.75
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 385 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 474
           +DT+   K KI  K  I PD + L+   KQ
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ 761


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 341 TKICMPPRSLKTKCRVDSFW 282
           T + +PP   K+ C++D  W
Sbjct: 135 TCLYVPPGIFKSTCKIDITW 154


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 215 SGGIPSLS*ILAFTFSMVSDASTSNV 138
           +GG+PS S  L  + +M  DA  +N+
Sbjct: 592 TGGVPSKSPTLTHSPTMYGDALNANL 617


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 329 MPPRSLKTKCRVDSFW 282
           +PP   K+ C++D  W
Sbjct: 102 VPPGIFKSTCKIDIAW 117


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 329 MPPRSLKTKCRVDSFW 282
           +PP   K+ C++D  W
Sbjct: 102 VPPGIFKSTCKIDITW 117


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 329 MPPRSLKTKCRVDSFW 282
           +PP   K+ C++D  W
Sbjct: 102 VPPGIFKSTCKIDITW 117


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 329 MPPRSLKTKCRVDSFW 282
           +PP   K+ C++D  W
Sbjct: 170 VPPGIFKSTCKIDITW 185


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 329 MPPRSLKTKCRVDSFW 282
           +PP   K+ C++D  W
Sbjct: 170 VPPGIFKSTCKIDITW 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.137    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,325
Number of Sequences: 438
Number of extensions: 3369
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)