Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1029
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   1.0  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    25   9.6  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.6  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
 Frame = +2

Query: 95  RETITRGDYAWRCPTF-----NVLPKRILRGGSHTCSRLTS----QARKPNPSSAIRQGL 247
           R  +    +A +CP+F     N +P  I +   H   R  S    +AR+P+PS  I  G 
Sbjct: 195 RRPVNFASHAKQCPSFLAMDPNNIPPEINKVSPHDDLRPLSDSRRRARRPHPSDTIPPGA 254

Query: 248 SRERK--AMYSQSKDNNRTTYARPSLPANANVS 340
           S  R   +   +S  +     A  ++ A AN++
Sbjct: 255 SMARSDPSQVPESNPSAAAAVAAAAVAAAANLT 287


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 479 VPSNNDIREVYVVQHYLGHAHKYFFPLDATVVTPNSN 369
           +   + +  V ++ H LG +HK F  +   V  PN++
Sbjct: 17  IEGKDKVHNVVILMHGLGDSHKSFANMAKNVPLPNTS 53


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 269 TSLSAHEIDLDVWRWK 222
           TS S +EI +D WRW+
Sbjct: 324 TSRSIYEICVDTWRWQ 339


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 473 SNNDIREVYVVQHYLGHAHKYFFPLDATVV 384
           S ++I + Y+      H+H Y  PLD  ++
Sbjct: 437 SGSEIADAYLFYQPFAHSHIYLSPLDIRIL 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,533
Number of Sequences: 5004
Number of extensions: 66141
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)